Body:Process for preparing dithiophosphate oligonucleotide analogs via nucleoside thiophosphoramidite intermediates
United States Patent: 5,218,088
Date Issued: June 8, 1993
United States Patent: 5,218,088
Date Issued: June 8, 1993
Body:
THIO-MODIFIED APTAMER SYNTHETIC METHODS AND COMPOSITIONS
Patent Number: 6,867,289
Issue Date of Patent: 03-15-2005
Patent Number: 6,867,289
Issue Date of Patent: 03-15-2005
Body:
Combinatorial Selection of Phosphorothioate Oligonucleotide Aptamers
US Patent: 6,423,493
Awarded July 23, 2002
US Patent: 6,423,493
Awarded July 23, 2002
Body:
Coupling Thin Layer Chromatography High Pressure Matrix Assisted Laser
Desorption/Ionization Fourier Transform Mass Spectrometry for the
Ganglioside Analysis. 52d ASMS, Nashville, Tennessee, May 23-38, 2004.
Desorption/Ionization Fourier Transform Mass Spectrometry for the
Ganglioside Analysis. 52d ASMS, Nashville, Tennessee, May 23-38, 2004.
Body:
Thioaptamers as protein binders. NHLBI Genomics to Biology. Bethesda, MD, 7/22-24/2003.
Body:
"Microfluidic Devices for Proteomic Analysis" 6th Siena Meeting, From Genome to Proteome: Biomarker Discovery & Imaging Proteomes. Siena, Italy Aug. 30-Sept. 2, 2004.
Body:
Neural-network-based parameter estimation in complex biomedical systems. 14th Genome Informatics Conference. Yokohma, Japan, 14-17 December 2003.
Body:
Spatial correlation of expression in P. falciparum. CAMDA, Durham, NC, November 10-12, 2004.
Body:
Analysis of the Cellular Proteome During Angiogenesis: The NHLBI Proteomics Center at the Medical College of Wisconsin. 51st American Society for Mass Spectrometry Conference (ASMS), 2003.
Body:
Silica Monolith Microchannels for Electrochromatographic Separations. 18th International Symposium on MicroScale Bioseparations (MSB), New Orleans, LA, USA, February 12–17, 2005.
Body:
Initial Survey of the Liver Proteome from Hyperhomocysteinemic and Normal Mice. ASBMB/IUBMB Annual Meeting in Boston June 12-16, 2004.
Body:
A Novel Hybrid Instrument Using a Commercial Electrospray Ionization Source with a High-performance FTMS for Proteomics Applications. ASMS annual meeting, Nashville, May 23-27, 2004.
Body:
Isotope-coded affinity tag (ICAT) approach to redox proteomics: Identification and quantitation of oxidant-sensitive cysteine thiols in complex protein mixtures. ASMS annual meeting, Nashville, May 23-27, 2004.
Body:
A Software Program for Mass Spectral Data Conversion and Automatic Proteomic Analysis. ASMS annual meeting, Nashville, May 23-27, 2004.
Body:
Initial Design and Implementation of a Cryogenic Preamplifier for FTICRMS. ASMS annual meeting, Nashville, May 23-27, 2004.
Body:
Ion-electron Reactions with High Pressure MALDI FTMS. ASMS annual meeting, Nashville, May 23-27, 2004.
Body:
Biological Applications of a Novel qQq-FTICR Mass Spectrometer: Top-Down Sequencing with Characterization of Post-translational Modifications. ASMS annual meeting, Nashville, May 23-27, 2004.
Body:
Improved Algorithms for Interpretation of High Resolution Mass Spectra. ASMS annual meeting, Nashville, May 23-27, 2004.
Title:Huang H, McComb ME, Huang S, Landon M, Skelton TP, Steinberg MH, Chui DHK, Cohen RA, Costello CE.
Date:2004-05-23
Body:
Proteomics Method for Automated Identification of Protein Variants and Post-Translational Modifications. ASMS annual meeting, Nashville, May 23-27, 2004.
Body:
Rapid Sample Delivery for Off-Line Capillary Electrophoresis MALDI-TOF MS. ASMS annual meeting, Nashville, May 23-27, 2004.
Body:
Development of a Protein 3-nitrotyrosine Identification Method Using Affinity Labeling and Solid Phase Capture. ASMS annual meeting, Nashville, May 23-27, 2004.
Body:
Brd2-containing Multiprotein Complexes Participate in Transcriptional Control of the Mammalian Cell Cycle. ASMS annual meeting, Nashville, May 23-27, 2004.
Title:McComb ME, Huang H, Huang S, Skelton TP, Steinberg MH, Chui DHK, Lim A, Prokaeva T, Connors LH, Skinner M, Cohen RA, Costello CE.
Date:2004-05-23
Body:
Probing Protein Cysteine Post-Translational Modifications. ASMS annual meeting, Nashville, May 23-27, 2004.
Body:
Mass spectrometry for glycobiology: Hard challenges, soft responses, and sweet rewards. Annual Meeting of the Dutch Society for Mass Spectrometry, Kerkrade, The Netherlands. October 2004.
Body:
Electrospray ionization using pointed fibers. 51st ASMS Conference on Mass Spectrometry and Allied Topics. Montreal, Canada, June 7-12, 2004.
Body:
"Electrospray ionization using pointed fibers" 16th International Mass Spectrometry Conference, Edinburgh, UK, August 31- September 3, 2003.
Body:
"New and emerging technologies for proteomic analysis" Basic Science Workshop on the NHLBI Proteomics Initiative, 7th Annual Scientific Meeting of the Heart Failure Society of America, Las Vegas, NV, September 21-24, 2003.
Body:
Topological and numberical extraction of dynamic S-system models from experimental time series. 4th International Conference on Bioinformatics in Atlanta, GA, November 13-26, 2003.
Body:
"A 2D gel electrophoresis approach to characterizing the effects of epicardium on early heart morphogenesis." Third Structural Birth Defects annual meeting, St. Louis, MO, June 12-13, 2004.
Body:
"A new approach to parameter estimation using S-systems: modeling the glycolytic pathway of Lactococcus lactis." 4th International Conference on Bioinformatics in Atlanta, GA, November 13-26, 2003.
Body:
High-throughput flow cytometric screening of combinatorial chemistry bead libraries for proteomics and drug discovery. XXII International Congress of the International Society of Analytical Cytology. Montpellier, France. May 23-27, 2004.
Body:
Plastic microfluidic devices for ESI-MS using embossed carbon conductors. ASMS Annual Meeting, May 23, 2004.
Body:
Clinical Proteomics: Applications of SELDI-MS to the early diagnosis and management of cancer. Bioinformatics group, UTMB, March 2004.
Body:
A ProteinChip Array-based Functional Proteomics Approach to Identify Tumor Suppressor Targets and Pathways. Bioinformatics group. Anderson Cancer Center, UTMB, April 2004.
Body:
Use of Proteomic Patterns in Human Sera to Identify Cervical Carcinoma Risk Among HPV-Infected Women. UTMB, April 30-May 1, 2004.
Body:
Use of Proteomic Patterns in Human Sera to Identify Cervical Carcinoma Risk Among HPV-Infected Women. Bioinformatics group, Ciphergen Users Meeting, San Diego, CA, May 9-12, 2004.
Body:
Capillary HPLC- electrospray ionization mass spectrometry using monolithic columns and carbon fiber ESI emitters. ASMS Annual Meeting, May 23, 2004.
Body:
Implementation and performance of a protein identification algorithm for intact protein MALDI/TOF/TOF spectra. 51st Amer Soc Mass Spectrom Conference, Montreal, Canada, June 8-12, 2003.
Body:
Algorithm and scoring function for the identification of proteins usingintact protein tandem mass spectra from MALDI/TOF/TOF. NLM Training Directors' Meeting, Washington, DC, July 9-11, 2003.
Body:
Isotope-coded affinity tag (ICAT) approach to redox proteomics: Identification and quantitation of oxidant-sensitive cysteine thiols in complex protein mixtures. ASMS annual meeting, Nashville, May 23-27, 2004.
Body:Data preprocessing facilitates metabolic pathway identification from time profiles. 11th International Conference on Intelligent Systems for Molecular Biology, ISMB, Brisbane, Australia, June 28- July 4, 2003.
Title:Yang X, Li X, Prow TW, Reece LM, Bassett SE, Luxon BA, Herzog NK, Aronson J, Shope RE, Leary JF, Gorenstein DG.
Date:2003-05-06
Body:
"High throughput screening of proteomics “Bead-Chip” libraries for drug discovery." 1st International Cytomics Conference; Coldra Woods, Newport, Wales, United Kingdom. May 6-9, 2003.
Body:
Improved methods for the mathematically controlled comparison of biochemical systems. BMC Theoretical Biology and Medical Modelling 1: 1, 2004.
Body:
ZoomQuant: A Software Tool for the Analysis of Comparative Proteomics Data. Keystone Symposia on Proteomics and Bioinformatics, Keystone, CO, USA. April 8-13, 2005.
Body:
Microfluidic device for Multidimensional Cell Analysis. 18th International Symposium on MicroScale Bioseparations (MSB), New Orleans, LA, USA. February 12-17, 2005.
Body:
An Integrated Microfluidic System for On-Chip Protein Preconcentration, Separation and Labeling. 18th International Symposium on MicroScale Bioseparations (MSB), New Orleans, LA, USA. February 12-17, 2005.
Body:
Isolation of protein ligands from large peptoid libraries. J Amer Chem Soc 125: 13995-14004, 2003.
Body:Automated piecewise power-law modeling of biological systems. J Biotechnol. 2010 Jan 8.
Body:Proteomic technologies in the study of kinases: Novel tools for the investigation of PKC in the heart. Pharmacol Res 55(6): 511-22, 2007.
Title:Enoksson M, Li J, Ivancic MM, Timmer JC, Wildfang E, Eroshkin A, Salvesen GS, Tao WA.
Date:2007-07-06
Body:
Identification of proteolytic cleavage sites by quantitativeproteomics J Proteome Res 6: 2850-2858, 2007.
Title:Bodenmiller B, Mueller LN, Pedrioli PG, Pflieger D, Junger MA, Eng JK, Aebersold R, Tao WA.
Date:2007-04-03
Body:
An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells. Mol Biosyst 3(4):275-86, 2007.
Body:Mitochondrial dysfunction increases allergic airway inflammation. J Immunol. 2009 Oct 15;183(8):5379-87.
Title:Cheng EC, Luo Q, Bruscia EM, Renda MJ, Troy JA, Massaro SA, Tuck D, Schulz V, Mane SM, Berliner N, Sun Y, Morris SW, Qiu C, Krause DS.
Date:2009-03-19
Body:Role for MKL1 in megakaryocytic maturation. Blood. 2009 113(12):2826-34.
Body:Role of reversible, thioredoxin-sensitive oxidative protein modifications in cardiac myocytes. Antioxid Redox Signal 2006 8 (11-12): 2153-9.
Body:
Effect of pollen-mediated oxidative stress on immediate hypersensitivity reactions and late-phase inflammation in allergic conjunctivitis. J Allergy Clin Immunol 116(4): 836-43, 2005.
Body:
Caveolae participate in TNFR1 signaling and internalization in a human endothelial cell line. Am J Path 166: 1273-82, 2005.
Body:Heterogeneity of functional responses in differentiated myeloid cell lines reveals EPRO cells as a valid model of Neutrophil functional activation. J Leukoc Biol 77: 669-79, 2005.
Body:
Amelioration of acute inflammation by systemic administration of a cell-permeable peptide inhibitor of NF-κB activation. Arthritis & Rheumatism 52: 951-58, 2005.
Title:Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, S.
Date:2004-01-01
Body:
Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res, 32 Database issue: D497-501, 2004.
Body:O-GlcNAc modification of nucleocytoplasmic proteins and diabetes. Med Mol Morphol 38: 84-91, 2005.
Body:
Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol. 2003;4(9):117, 2003.
Body:
Dynamic profiling and canonical modeling: Powerful partners in metabolic pathway identification. In R Goodacre and GG.Harrigan (Eds), Metabolite Profiling: Its Role in Biomarker Discovery and Gene Function Analysis. Kluwer Academic Publishing. Dorrecht, The Netherlands, 2003.
Body:
Comparative evaluation of word composition distances for the recognition of SCOP relationships.
Bioinformatics, 20(2):206-15, 2004.
Body:
The study of macromolecular complexes by quantitative proteomics. Nat Genet. 33(3):349-55.
Title:Srivastava M, Eidelman O, Zhang J, Paweletz C, Caohuy H, Yang Q-F, Jacobson KA, Heldman E, Jozwi C, Pollard BS, Pollard HB.
Date:2004-05-18
Body:
Digitoxin mimics CFTR-gene therapy, and suppresses hypersecretion of proinflammatory interleukin-8 (IL-8) from cystic fibrosis lung epithelial cells. Proc Nat Acad Sci (USA) 101: 7693-7698, 2004.
Title:Sundstrom J, Sullivan L, D’Agostino RB, Jacques PF, Selhub J, Rosenberg IH, Wilson PWF, Levy D, Vasan RS.
Date:2003-11-03
Body:
Plasma homocysteine, hypertension incidence, and blood pressure tracking: The Framingham Heart Study. Hypertension 42 (6):1100-1105, 2003. (Epub 2003 Nov 03).
Title:Wu X, Moellering D, Vestri H, Wei H, Maianu L, Rosinski J, Rhees B, So V, Allison D, Martin M, Garvey WT.
Date:2005-11-01
Body:Dysregulation of Mitochondria-Related Genes and Transcription Factors Involved in Mitochondrial Biogenesis in Skeletal Muscle from Insulin Resistant Humans. Diabetes 54 (Suppl. 2):A273, 2005.
Body:Antibodies against citrullinated proteins enhance tissue injury in experimental autoimmune arthritis. J Clin Invest. 116(4):961-73, 2006.
Body:
An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results.
BMC bioinformatics 5(1): 9, 2004
Body:
Hypochlorite impairs EDNO bioactivity through a superoxide-dependent mechanism. Arterioscler Thromb Vasc Biol 24(11): 2028-33. Epub 2004 Aug 26
Body:
Attomole peptide analysis by high-pressure MALDI FTM. Anal Chem 75: 6449-6454, 2003.
Body:
A high pressure matrix-assisted laser desorption ion source Fourier transform mass spectrometry ion source designed to accommodate large targets with diverse surfaces. J Am Soc Mass Spectrom 15: 128-132, 2004
Body:
Isotope-coded affinity tag approach to identify and quantify oxidant-sensitive protein thiols. Molec Cell Proteom 3:273-8.
(Epub PM:14726493, 2004)
Body:Single cell profiling of potentiated phospho-protein networks in cancer cells.
Cell 118(2):217-28, 2004.
Cell 118(2):217-28, 2004.
Body:Heart failure, myocardial stunning, and troponin: a key regulator of the cardiac myofilament. Congest Heart Fail. 12(1):32-8, 2006.
Body:Bioinformatics and proteomics approaches for aging research. Biogerontology. 6 (4):227-32, 2005.
Body:Disposable hydrophobic surface on MALDI targets for enhancing MS and MS/MS data of peptides. Anal Chem. 77(20):6609-17, 2005.
Body:Phospho-proteomic immune analysis by flow cytometry: from mechanism to translational medicine at the single-cell level. Immunol Rev 210:208-28, 2006.
Body:Mapping normal and cancer cell signalling networks: towards single-cell proteomics. Nat Rev Cancer. 6(2):146-55, 2006.
Body:Causal protein-signaling networks derived from multiparameter single-cell data.
Science 308 (5721): 523-9, 2005.
Science 308 (5721): 523-9, 2005.
Body:
Advances in protein complex analysis using mass spectrometry. J Physiol 563.1: 11-21, 2005
Body:
Neural network-based parameter estimation in complex biochemical systems. Genome Informatics 14: 114-23, 2003.
Body:
S-glutathiolation of Ras mediates redox-sensitive signaling by angiotensin II in vascular smooth muscle cells. J Biol Chem 2004; 279(28):29857-62.
Title:Sethuraman M, McComb ME, Huang H, Huang S, Heibeck T, Costello CE and Cohen RA.
Date:2004-11-03
Body:
Isotope-coded affinity tag (ICAT) approach to redox proteomics: Identification and quantification of oxidant-sensitive cysteine thiols in complex protein mixtures. J Proteome Res, 3(6):1228-33, 2004.
Body:
Coupling thin layer chromatography with vibrationally cooled matrix-assisted laser desorption/ionization Fourier transform mass spectrometry for the analysis of ganglioside mixtures. Anal Chem 76(21): 6484-91, 2004.
Body:
High pressure MALDI FTMS: Implications for proteomics. Int J Mass Spec 234, 203-212, 2004.
Body:
Capillary high-performance liquid
chromatography-electrospray ionization mass spectrometry using
monolithic columns and carbon fiber electrospray ionization emitters. Chromatogr A 1047(1):49-57, 2004.
Body:
The potential of protein-detecting microrrays for clinical diagnostics. Adv Clin Chem 38: 217-38, 2004.
Body:
Synthetic molecules as antibody replacements. Acc Chem Res 37(9): 711-8, 2004.
Body:Photolithographic synthesis of peptoids. J Am Chem Soc. 126(13): 4088-9, 2004.
Body:
Peptides as modulators of enzymes and regulatory proteins. Methods 32, 406-415, 2004.
Body:
Isolation of protein ligands from large peptoid libraries. J. Amer Chem Soc 125, 13995-14004, 2003.
Body:
Quantum dots as a visual aid for screening bead-bound combinatorial libraries. ChemBiochem 4, 1242-1245, 2003.
Body:
Mixed Element Capture Agent (MECAs): A Simple Strategy for the Construction of Synthetic, High Affinity Protein Capture Ligands. J Amer Chem Soc 125, 9550-9551, 2003.
Body:
Immobilized peptides as high affinity capture agents for self-associating proteins. Chem Biol 10, 251-259, 2003.
Body:Antigen arrays for antibody profiling. Curr Opin Chem Biol. 10(1):67-72, 2006.
Body:The Effects of Thiophosphate Substitutions on Native siRNA Gene Silencing. Biochem. Biophys. Res. Commun. 329:1026-1030, 2005.
Body:
Identification of proteins in slow continuous ultrafiltrate by reverse phase chromatography and proteomics. J Proteome Res 3:1254, 2004.
Body:The dawn of a new era of metabolic systems analysis. Drug Discovery Today BioSilico 2(5), 182-189, 2004.
Body:
Challenges for the identification of metabolic pathways from time series data. In Silico Biology 5, 0010, 2004.
Title:Oates JC, Varghese S, Bland AM, Taylor TP, Self SE, Stanislaus R, Almeida JS, Arthur JM.
Date:2005-12-08
Body:Prediction of urinary protein markers in lupus nephritis. Kidney International 68: 2588-92, 2005.
Body:
XML4MAT: Inter-conversion between MatlabTM structured variables and the markup language MbML. Computer Science Preprint Archive (Elsevier), 12: 9-17. 2003.
Body:
A mitochondrial oscillator dependent on reactive oxygen species. Biophys J, 87: 2060-73, 2004.
Body:
O-GlcNAc transferase is in a functional complex with protein phosphatase 1 catalytic subunits. J Biol Chem, 279: 38466-70, 2004.
Body:
Proteomic analysis of Rac1 transgenic mice displaying dilated cardiomyopathy reveals an increase in creatine kinase M-chain protein abundance. Mol Cell Biochem, 251: 145-51, 2003.
Body:
Stunned peri-infarct canine myocardium is characterized by degradation of troponin T, not troponin I. Cardiovasc Res, 63: 217-25, 2004.
Title:Kristiansen TZ, Bunkenborg J, Gronborg M, Molina H, Thuluvath PJ, Argani P, Goggins MG, Maitra A, Pandey A.
Date:2004-07-03
Body:
A proteomic analysis of human bile. Mol Cell Proteomics, 3: 715-28, 2004.
Body:O-GlcNAcylation regulates phosphorylation of tau: a mechanism involved in Alzheimer's disease. Proc Natl Acad Sci U S A, 101: 10804-9, 2004.
Body:
Study of peptide-sugar non-covalent complexes by infrared atmospheric pressure matrix-assisted laser desorption/ionization. J Mass Spectrom, 39: 736-42, 2004.
Body:
O-GlcNAc a sensor of cellular state: the role of nucleocytoplasmic glycosylation in modulating cellular function in response to nutrition and stress. Biochim Biophys Acta, 1673: 13-28, 2004.
Body:
Dynamic O-GlcNAc modification of nucleocytoplasmic proteins in response to stress. A survival response of mammalian cells. J Biol Chem, 279: 30133-42, 2004.
Body:
The transcription factor PDX-1 is post-translationally modified by O-linked N-acetylglucosamine and this modification is correlated with its DNA binding activity and insulin secretion in min6 beta-cells. Arch Biochem Biophys, 415: 155-63, 2003.
Body:
Roles of the tetratricopeptide repeat domain in O-GlcNAc transferase targeting and protein substrate specificity. J Biol Chem, 278: 24608-16, 2003.
Body:
Mitochondrial proteomics. Undercover in the lipid bilayer. Basic Res Cardiol, 98: 219-27, 2003.
Body:
Liquid infrared atmospheric pressure matrix-assisted laser desorption/ionization ion trap mass spectrometry of sialylated carbohydrates. Anal Chem, 75: 3212-8, 2003.
Body:
O-GlcNAc turns twenty: functional implications for post-translational modification of nuclear and cytosolic proteins with a sugar. FEBS Lett, 546: 154-8, 2003.
Title:Labugger R, Simpson JA, Quick M, Brown HA, Collier CE, Neverova I, Van Eyk JE.
Date:2003-06-01
Body:
Strategy for analysis of cardiac troponins in biological samples with a combination of affinity chromatography and mass spectrometry. Clin Chem, 49: 873-9, 2003.
Body:
Fragmentation of cationized phosphotyrosine containing peptides by atmospheric pressure MALDI/Ion trap mass spectrometry. J Am Soc Mass Spectrom, 14: 581-92, 2003.
Body:
Optimizing protein solubility for two-dimensional gel electrophoresis analysis of human myocardium. Proteomics, 3: 815-20, 2003.
Body:
O-GlcNAc modification: a nutritional sensor that modulates proteasome function. Trends Cell Biol, 14: 218-21, 2004.
Body:
Calcium-independent contraction and sensitization of airway smooth muscle by p21-activated protein kinase. Am J Physiol Lung Cell Mol Physiol, 284: L863-70, 2003.
Body:
Tandem time-of-flight mass spectrometry with a curved field reflectron. Anal Chem, 76: 1976-81, 2004.
Body:
National Heart, Lung, And Blood Institute Clinical Proteomics Working Group report. Circulation, 109: 1697-703, 2004.
Body:
A novel proteomic approach for specific identification of tyrosine kinase substrates using [13C]tyrosine. J Biol Chem, 279: 15805-13, 2004.
Title:Thompson PR, Wang D, Wang L, Fulco M, Pediconi N, Zhang D, An W, Ge Q, Roeder RG, Wong J, Levrero M, Sartorelli V, Cotter RJ, Cole PA.
Date:2004-04-11
Body:
Regulation of the p300 HAT domain via a novel activation loop. Nat Struct Mol Biol, 11: 308-15, 2004.
Body:
An integrated model of cardiac mitochondrial energy metabolism and calcium dynamics. Biophys J, 84: 2734-55, 2003.
Body:
Localization of the O-GlcNAc transferase and O-GlcNAc-modified proteins in rat cerebellar cortex. Brain Res, 966: 194-205, 2003.
Body:
A miniaturized matrix-assisted laser desorption/ionization time of flight mass spectrometer with mass-correlated acceleration focusing. J Mass Spectrom, 38: 296-304, 2003.
Body:
Dynamic nuclear and cytoplasmic glycosylation: enzymes of O-GlcNAc cycling. Biochemistry, 42: 2493-9, 2003.
Body:
O-GlcNAc: a regulatory post-translational modification. Biochem Biophys Res Commun, 302: 435-41, 2003.
Title:Grønborg M, Bunkenborg J, Kristiansen TZ, Jensen ON, Yeo CJ, Hruban RH, Maitra A, Goggins MG, Pandey A.
Date:2004-09-30
Body:
Comprehensive proteomic analysis of human pancreatic juice. J Proteome Res, 3: 1042-55, 2004.
Body:
Heart disease, clinical proteomics and mass spectrometry. Dis Markers, 20: 167-78, 2004.
Body:
Improved procedures for N-terminal sulfonation of peptides for matrix-assisted laser desorption/ionization post-source decay peptide sequencing. Rapid Commun Mass Spectrom, 18: 96-102, 2004.
Body:
Nucleocytoplasmic glycosylation, O-GlcNAc: identification and site mapping. Methods Mol Biol, 284: 175-94, 2004.
Body:
Genomics, proteomics and bioinformatics of human heart failure. J Muscle Res Cell Motil, 24: 251-60, 2003.
Body:
O-GlcNAc: a multifaceted post-translational modification. Bio Tech Intl. 16(3): 6-9, 2004.
Body:
Structural and functional diversity of glycoconjugates: a formidable challenge to the glycoanalyst. Methods Mol Biol, 213: 3-24, 2003.
Body:
Dynamic interplay between O-glycosylation and O-phosphorylation of nucleocytoplasmic proteins: a new paradigm for metabolic control of signal transduction and transcription. Prog Nucleic Acid Res Mol Biol, 73: 107-36, 2003.
Body:
Mapping Sites of O-GlcNAc Modification Using Affinity Tags for Serine and Threonine Post-translational Modifications. Mol Cell Proteomics, 10: 791-804, 2002.
Body:
Glycobiology and cancer: meeting summary and future diections. Cancer Biol Ther, 3: 233-7, 2004.
Title:Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, Lappe M, Li Y, Zeng R, Rana D, Nikolski M, Husi H, Brun C, Shanker.
Date:2004-02-22
Body:
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol, 22: 177-83, 2004.
Body:
Ogt-dependent X-chromosome-linked protein glycosylation is a requisite modification in somatic cell function and embryo viability. Mol Cell Biol, 24: 1680-90, 2004.
Body:
Respiratory muscle injury, fatigue and serum skeletal troponin I in rat. J Physiol, 554: 891-903, 2004.
Body:
Van Eyk JE. Lessons from old and new kinases. Circ Res, 94: 135-7, 2004.
Body:
Fragmentation of Sialylated Carbohydrates Using Infrared Atmospheric Pressure MALDI Ion Trap Mass Spectrometry from Cation-Doped Liquid Matrixes. Anal Chem 75: 6523–6530, 2003.
Body:
The coactivator of transcription CREB-binding protein interacts preferentially with the glycosylated form of Stat5. J Biol Chem, 279: 3563-72, 2004.
Body:
Fragmentation studies of noncovalent sugar-sugar complexes by infrared atmospheric pressure MALDI. J Am Soc Mass Spectrom, 14: 1158-65, 2003.
Body:Dynamic interplay between O-GlcNAc and O-phosphate: the sweet side of protein regulation. Curr Opin Struct Biol, 13: 631-6, 2003.
Body:Infrared atmospheric pressure MALDI ion trap mass spectrometry of frozen samples using a Peltier-cooled sample stage. Anal Chem, 76: 5887-93, 2004.
Body:
Proteomic approaches to analyze the dynamic relationships between nucleocytoplasmic protein glycosylation and phosphorylation. Circ Res, 93: 1047-58, 2003.
Body:
A proteomic approach for quantitation of phosphorylation using stable isotope labeling in cell culture. Anal Chem, 75: 6043-9, 2003.
Body:
C-terminal truncation of cardiac troponin I causes divergent effects on ATPase and force: implications for the pathophysiology of myocardial stunning. Circ Res, 93: 917-24, 2003.
Body:
Another new kinase targets troponin I. Circ Res, 95: 1043-5, 2004.
Body:Phosphorylation and mutation of human cardiac troponin I deferentially destabilize the interaction of the functional regions of troponin I with troponin C. Biochemistry, 42: 14460-8, 2003.
Body:
Anoxic fibroblasts activate a replication checkpoint that is bypassed by E1a. Mol Cell Biol, 23: 9032-45, 2003.
Body:
Two-dimensional gel electrophoresis database of murine R1 embryonic stem cells. Proteomics, 4: 3813-32, 2004.
Body:
A role for N-acetylglucosamine as a nutrient sensor and mediator of insulin resistance. Cell Mol Life Sci, 60: 222-8, 2003.
Body:
Tackling the Phosphoproteome: Tools and Strategies. Curr Opin Chem Biol, 7: 64-9, 2003.
Body:
Identification and cloning of a novel family of coiled-coil domain proteins that interact with O-GlcNAc transferase. J Biol Chem, 278: 5399-409, 2003.
Body:
Mathematical Model of NF-kappaB Regulatory Module. J Theor Biol 228(2):195-215, 2004.
Body:
Stable isotope labeling with amino acids in cell culture (SILAC) for studying dynamics of protein abundance and post-translational modifications. Science's STKE 2005 267: pl2.
Body:
Synthetic molecules as antibody replacements. Acc Chem Res 37(9): 711-8, 2004.
Body:
Multi-destructive pathways triggered in photoreceptor cell death of the RD mouse as determined through gene expression profiling. J Biol Chem 279(40): 41903-910, 2004.
Body:
Whole image comparison of microarray time-course data: A case study in D. Discoideum, 2004.
Body:
2DE proteomic problems: An overview and specific case. AES Newsletter, Vol 9, Issue 4. October, 2004.
Body:
O-linked N-acetylglucosamine and cancer: messages from the glycosylation of c-Myc. Adv Exp Med Biol, 491: 413-8, 2001.
Body:
TRPC1 forms the stretch-activated cation channel in vertebrate cells. Nature Cell Biology 10:1038/ncb1218, 2005.
Body:
Transformation of low affinity lead compounds into high affinity protein capture agents. Chem Biol 11: 1127-37, 2004.
Body:
ZoomQuant: An Application for the Quantitation of Stable Isotope Labeled Peptides. J Amer Soc Mass Spectrometry 16: 302-306, 2005.
Body:
Stochastic effects of multiple regulators on expression profiles in eukaryotes. J Theor Biol 233: 423-33, 2005.
Body:
High-throughput proteome-screening for biomarker detection. Mol Cell Proteomics 4(2): 182-90, 2005.
Body:
Mass spectrometry-based quantitative proteomics probiling. Briefings in Functional Genomics and Proteomics 4(1): 1-12, 2005.
Title:Zhang H, Yi EC, Li XJ, Mallick P, Kelly-Spratt KS, Masselon CD, Camp DG, Smith RD, Kemp CJ, Aebersold R.
Date:2005-02-01
Body:
High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry. Mol Cell Proteomics 4(2):144-155.
Body:
S-Glutathiolation by peroxynitrite activates SERCA during arterial relaxation by nitric oxide. A mechanism targeted by oxidants in vascular disease. Nat Med 10: 1200-120, 2004.
Title:Choi JH, Hur J, Yoon CH, Kim JH, Lee CS, Youn SW, Oh IY, Skurk C, Murohara T, Park YB, Walsh K, Kim HS.
Date:2004-11-19
Body:
Augmentation of therapeutic angiogenesis using genetically-modified human endothelial progenitor cells with altered glycogen synthase kinase-3beta activity. J Biol Chem 279: 49430-38, 2004.
Title:Cournoyer JJ, Pittman JL, Ivleva VB, Fallows E, Waskell L, Costello CE, O'Connor PB.
Date:2005-02-14
Body:
Deamidation: Differentiation of aspartyl from isoaspartyl products in peptides by electron capture dissociation. Protein Sci 14: 452-63, 2005.
Title:Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK Jr, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R.
Date:2004-11-22
Body:
A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechnol 22: 1459-66, 2004.
Body:
S-nitrosoprotein formation and localization in endothelial cells. Proc Natl Acad Sci 102(1): 117-22, 2005.
Body:
1H, 13C and 15N Resonance Assignments for domain III of the West Nile Virus envelope protein. J Biomol 29: 445-6, 2004.
Body:
Solution Structure of Domain III from the Envelope Protein of West Nile Virus strain 385-99. J Biol Chem 279: 38755-761, 2004.
Body:
Progress in Thioaptamer Development. Current Drug Target 5: 705-15, 2005.
Body:
TATA-Box Binding Protein Induces Structure in the Recombinant Glucocorticoid Receptor AF1 Domain. Proc Natl Acad Sci U S A 101: 16425-30, 2004
Title:Thiviyanathan V, Yang Y, Kaluarachchi K, Rijnbrand R, Gorenstein DG, Lemon SM.
Date:2004-08-24
Body:
High Resolution Structure of a Picornaviral Internal cis-Acting Replication Element (cre). Proc Natl Acad Sci U S A 101: 12688-93, 2004.
Body:
A comparison of epidemiologic and immunologic features of bronchiolitis caused by influenza virus and respiratory syncytial virus. J Med Virol 75: 282-89, 2005.
Title:Brasier AR, Spratt H, Wu Z, Boldogh S, Zhang Y, Garofalo RP, Casola A, Pashmi J, Haag A, Luxon B, Kurosky A.
Date:2004-11-01
Body:
Nuclear heat shock response and novel nuclear domain
10 reorganization in respiratory syncytial virus-infected a549 cells identified by high-resolution two-dimensional gel electrophoresis. J Virol 78: 11461-76, 2004.
Body:
A simple solid phase mass tagging approach for quantitative proteomics. J Proteome Res 3: 104-111, 2004.
Body:
A glycine-dependent riboswitch that uses cooperative binding to control gene expression. Science 306: 275-79, 2004.
Body:
AIP1/DAB2IP, a novel member of the Ras-GAP family, transduces TRAF2-induced ASK1-JNK activation. J Biol Chem 279(43): 44955-965, 2004.
Title:Carriero N, Osier MV, Cheung KH, Miller PL, Gerstein M, Zhao H, Wu B, Rifkin S, Chang J, Zhang H, White K, Williams K, Schultz M.
Date:2005-01-31
Body:
A high productivity/low maintenance approach to high performance computation for biomedicine: four case studies. J Am Med Inform Assoc 12(1): 90-8, 2005.
Body:
Dissecting the molecular control of endothelial NO synthase by caveolin-1 using cell-permeable peptides. Proc Natl Acad Sci U S A 102(3): 761-6, 2005.
Title:Bauer PM, Yu J, Chen Y, Hickey R, Bernatchez PN, Looft-Wilson R, Huang Y, Giordano F, Stan RV, Sessa WC.
Date:2005-01-04
Body:
Endothelial-specific expression of caveolin-1 impairs microvascular permeability and angiogenesis. Proc Natl Acad Sci U S A 102(1): 204-9, 2005.
Body:
Paralog-Selective Ligands for Bcl-2 Proteins. J Am Chem Soc. 16;127(6): 1596-7, web release date: Jan. 25, 2005.
Body:Photolithographic synthesis of cyclic peptide arrays using a differential deprotection strategy. Chem Comm (5) :581-3, 2005.
Body:
A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechol 22(11): 1459-66, 2004.
Body:
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry. Genome Biol 6: R9, 2005.
Title:Marelli M, Smith J, Jung S, Yi E, Nesvizhskii A, Christmas RH, Saleem RA, Tam YY, Faragasanu A, Goodlett DR, Aebersold R, Rachubinski RA, Aitchison JD.
Date:2004-12-20
Body:
Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane. J Cell Biol 167: 1099-112, 2004.
Body:
N-acetylation and ubiquitin-independent proteasomal degradation of p21Cip1. Mol Cell 16: 839-47, 2004.
Body:
AGML Central: web based gel proteomic infrastructure. Bioinformatics 21(9):1754-7, 2004.
Title:Costello CE, Aebersold R, VanEyk J, Greene AS, Knapp DR, Nolan GP, Pollard HB, Kurosky A, Kodadek T, Williams KR.
Date:2004-08-30
Body:
The United States National Heart Lung and Blood Institute Proteomics Initiative, 6th Siena Meeting, From Genome to Proteome: Biomarker Discovery & Imaging Proteomes. Siena, Italy Aug. 30-Sept. 2, 2004.
Body:
Tandem mass spectrometry database searching. Encyclopedia of Genetics, Genomics, Proteomics & Bioinformatics, ed. Dunn M, Jorde L, Little P, Subramaniam S. John Wiley & Sons Ltd, Chichester, UK. 4/15/2005.
Title:Adachi T, Weisbrod RM, Trucillo MP, Xu S, Sethuraman M, Sharov VS, Schoneich C, Cohen RA.
Date:2003-08-30
Body:
Specific thiol oxidation can account for inactivation of the sarco/endoplasmic reticulum calcium ATPase and reduced NO-induced relaxation caused by high glucose. Circulation 108:IV-134, 2003.
Body:
Use of statistical methods for estimation of total number of charges in a mass spectrometry experiment. Anal Chem. 76(10):2756-62, 2004.
Body:
Initial survey of the liver proteome from hyperhomocysteinemic and normal mice. FASEB J 18 (8): C66, 2004.
Title:Costello CE, Ivleva VB, Budnik B, Jebanathirajah JA, Elkin YN, Sommer U, Moyer SC, Kaur P, O’Connor PB.
Date:2004-09-30
Body:
Development and application of vibrationally cooled matrix-assisted laser desorption/ionization for structural studies of biopolymers. Desorption 2004, St. Petersburg, Russian Federation, September 2004.
Body:
Mass spectrometry developments to facilitate glycoproteomics. HUPO 3, Human Proteome Conference, Beijing, PRC, October 2004.
Body:
Proteomic analysis of shear stress protection mechanisms in endothelial cells. Experimental Biology (FASEB), San Francisco, CA, USA, April 1-5, 2006.
Body:
Optimization of Multi-Dimensional Protein Identification Technologies (MudPIT) for Fourier Transform Ion Cyclotron Resonance (FT-ICR) Mass Spectrometry. 53rd ASMS Conference on Mass Spectrometry, June 5 - 9, 2005.
Title:Gulcicek EE, Berberich M, Colangelo C, Lam T, McMurray W, Stone K, Williams, KR.
Date:2005-06-05
Body:
Mass Spectrometric Integration of Robust Phosphoprotein Profiling Strategies. 53rd ASMS Conference on Mass Spectrometry, June 5 - 9, 2005.
Body:
A Comprehensive Cellular Snapshot Using Multiple Protein Profiling Technologies. 53rd ASMS Conference on Mass Spectrometry, June 5 - 9, 2005.
Body:
Protein Profiling of Mammalian Cells Using MALDI-TOF and LC/ESI/MS-MS. ASMS 2005, San Antonio, TX, June 5-9, 2005.
Body:
Quantitative proteomic analysis of metabolically labeled ammonium starvation Nitrosonomous europaea using ZoomQuant_N15. ASMS 2005, San Antonio, TX, June 5-9, 2005.
Body:
Proteomic profiling of pancreatic cancer for biomarker discovery. Mol Cell Proteomics 4: 523-33, 2005.
Body:
Mass spectrometry-based expression profiling of clinical prostate cancer. Mol Cell Proteomics 4: 545-54, 2005.
Body:
Protein Profiling of Spinal Cord Tissue After Spinal Cord Injury. ASMS 52nd ASMS Conference, Gaylord Opryland Hotel, Nashville, TN May 23-27, 2004.
Title:Hosakote YM, Guerrero-Plata A, Wu Z, Haag A, Spratt H, Stafford SJ, Castro S, Brasier AR, Kurosky A, Garofalo RP.
Date:2004-08-13
Body:
Newly Identified Proteins In The Lower Respiratory Tract By High Resolution 2d-Gel Electrophoresis And Peptide Mass Fingerprinting. Annual McLaughlin Fellowship Colloquium Abstract, 2004.
Body:
Investigation of Apoptotic Pathways in Vascular Endothelial Cells through Functional Proteomics and Mass Spectrometry. Experimental Biology (FASEB), San Diego, CA, USA, April 2-6, 2005.
Body:
ICAM-1 as a basis for vascular leak induced by cytokine-mediated endothelial cell activation. J Invest Dermatol 122 (3): A4, 2004.
Body:
ICAM-1 as a basis for vascular leak induced by cytokine-mediated endothelial cell activation. 65th Annual Meeting of the Society for Investigative Dermatology in April, 2004.
Body:
Aligning Spectral Peaks in Mass Spectrometry Data with a Robust Point Matching Approach. 52nd ASMS Conference on Mass Spectrometry and Allied Topics, May 23 - 27, 2004.
Body:Novel Liquid-based 2D Electrophoresis in Microchannel Plates. The University of Texas System, Molecular Medicine Symposium, Translating Discoveries into Health, February 21-22, 2005.
Body:
On-chip Single Cell Lysis Integrated with Micro-Flow Cytometry. 8th International Conference on Miniaturised Systems for Chemistry and Life Sciences (MicroTAS), Malmo, Sweden, Sept 26-30, 2004.
Body:
Analysis of differential protein expression during angiogenesis in different rat strains using isotopic labeling and multi-dimensional LC-MS. 52nd American Society for Mass Spectrometry Conference (ASMS), Nashville, TN, May 23-27, 2004.
Body:
THIO-MODIFIED APTAMER SYNTHETIC METHODS AND COMPOSITIONS
Publication No.: WO/2000/024404
International Application No.:PCT/US1999/024058
Publication Date:04.05.2000
International Filing Date: 26.10.1999
Publication No.: WO/2000/024404
International Application No.:PCT/US1999/024058
Publication Date:04.05.2000
International Filing Date: 26.10.1999
Body:
University of Southern Denmark - Odense, Denmark. December 17, 2004.
Title:Berggren T, Bonilla L, Richmond T, Licklider L, Hicks W, Karger B, Smith LM, Thomson JA, Greene AS, Fenyo D.
Date:2004-05-23
Body:
Comparison of Quantitative Proteomic Analysis Methods on Human Embryonic Stem Cells. 52nd American Society for Mass Spectrometry Conference (ASMS), Nashville, TN, May 23-27, 2004.
Body:
Fragmentation methods of odd and even electron ions in HP MALDI FTMS. ASMS Annual Meeting, Nashville, May 23-27, 2004.
Body:
Removal of Albumin and Immunoglobulin from Serum Facilitates Proteomic Analysis. HUPO meeting, October 8-11, 2003.
Body:
Tandem Time-of-Flight Mass Spectrometry with a Curved Field Reflectron. 51st Annual American Society for Mass Spectrometry in Montreal, June 10-13, 2003.
Body:
Role of O-GlcNAc in Platelet Activation and Function. American Heart Association Meeting, New Orleans, La., November 7-10, 2004.
Body:
Mass Spectrometry Analysis of Brd2-containing Multiprotein Complexes That Participate in Transcriptional Control of the Mammalian Cell Cycle. ASMS Annual Meeting, Nashville, May 23-27, 2004.
Body:
Developing novel technologies for Proteomics directly from whole cells. Experimental Biology (FASEB 2004), Washington, DC, April 17-21, 2004.
Body:
Molecular genetics: approaches to microvascular research. Experimental Biology (FASEB 2004), Washington, D.C., April 17-21, 2004.
Body:
The Qcomp method for the rapid peptide identification using qualitative amino acid composition and mass. Keystone Symposia on Mass Spectrometry in Systems Biology, Santa Fe, NM, Feb 14-19, 2004.
Body:
Alternative approaches to peptide identification from MS data. Keystone Symposia on Mass Spectrometry in Systems Biology, Santa Fe, NM, Feb 14-19, 2004.
Body:
Dynamic Interplay Between O-GlcNAc and Phosphorylation: Roles in Signaling, Stress Responses and Transcription. FEBS International Meeting on Signal Transduction, Plenary Lecture, Brussels, Belgium, July 3-8, 2003.
Body:
Dynamic Interplay Between O-GlcNAc and Phosphorylation: Roles in Signaling, Stress Responses, and Transcription. Annual Meeting of the American Chemical Society, New York, NY, September 7-11, 2003.
Body:
O-Linked N-Acetylglucoamine (O-GlcNAc) is a Metabolic Sensor Modulating Transcription, Signaling and Stress Responses. 13th Annual Beckman Symposium, City of Hope, Duarte, CA, 2003.
Body:
O-GlcNAcylation Globally Protects Cells from Stress and is Cardioprotective. Oxidative Post-Translational Modifications in the Cardiovascular System,' Boston University School of Medicine. October 6-8, 2004.
Title:Hart GW, Zachara NE, Wells L, Vosseller K, Iyer S, Kamemura K, Sakabe K, Cheung W, Slawson C, Whelan S, Lakshmanan T.
Date:2004-07-20
Body:
Dynamic Protein Glycosylation by O-GlcNAc is a Metabolic Sensor Modulating Transcription, Signaling and Stress Responses in all Multi-C
Body:
Purification of cardiac sarcoplasmic reticulum vesicles by affinity chromatography and separation of the ryanodine receptor by SDS-agarose gel electrophoresis. International Council of Electrophoresis Society, 2003.
Body:
Comprehensive multi-dimensional separations using microfluidic devices. Eighth International Symposium on Hyphenated Techniques in Chromatography and Hyphenated Chromatographic Analyzers (HTC-8), Brugge, Belgium, February 4-6, 2004.
Body:
Tandem TOF/TOF Mass Spectrometry at Very High (20 keV) Collision Energies, American Society for Mass Spectrometry in Montreal, Quebec, Canada, June 8-12, 2003.
Body:
Ischemic Preconditioning Augments Novel Glycosyl Post-translational Modification Sufficient for Cardioprotection. American Heart Association Meeting, New Orleans, LA. November 7 - 10, 2004,
Body:
Intracellular metabolic switch imparts cardioprotective effects and may represent a novel mechanism of ischemic preconditioning. Experimental Biology, Washington, DC. April 17-21, 2004.
Body:
Mitochondrial Subfractionation and Analysis of Basic Proteins in Cardiac Myocytes. International Council of Electrophoresis Societies Meeting in Glasgow, UK, May 27-30 2003.
Body:
Broad Institution of Harvard and MIT, Boston, MA. October 28, 2004
Body:Medical Univerity South Carolina, Charleston, SC. October 11, 2004.
Body:
Bioinformatics issues with database searching with genomic and proteomic data. Michigan Bioinformatics Seminar Series, University of Michigan, Ann Arbor, Michigan. October 16, 2003
Body:
Proteomic Approaches for Phosphorylation Analysis. Division of Gastroenterology, Johns Hopkins University, Baltimore, MD. December, 2003.
Body:
Proteomic Approaches for Studying Signal Transduction Pathways. 4th Workshop on Molecular Medicine, Madrid, Spain, November, 2003.
Body:
Proteomic Approaches to Study Signal Transduction Pathways. Vanderbilt Cancer Center Seminar Series, Nashville, TN. December, 2003
Body:
Translational Cancer Research: From Basic Science to Patient Care. Mass Spectrometry-based Proteomics for a Global Analysis of Signal Transduction Pathways. Vermont Cancer Center Research Symposium Burlington, VT, October 2-3, 2003.
Body:
Tackling proteomics with microfluidics and signature peptides. 17th International Symposium on Microscale Separations and Analysis (HPCE 2004), Salzburg, Austria, February 8-12, 2004.
Body:
Broad based Proteomic Analysis in Heart disease. Experimental Biology Meeting, Washington, DC, April 17-21, 2004.
Body:
Cardiovascular proteomics provide insight in to heart failure. Aging heart and vessels (submeeting of ISHR) Melbourne, Australia, August, 2004.
Body:
Clinical Proteomics – application to cardiovascular pulmonary disease. NIH Proteomic Seminar Series, Bethesda MD. March 2004
Body:
Disease staging and risk stratification biomarkers: disease induced protein modifications. Protein Biomarkers 2004, Cambridge Healthtech Institute, Philadelphia. PA September 8-10, 2004.
Body:
Heart disease: mechanism to biomarkers. Federation of Analytical Chemists and Spectroscopy Societies, Portland, OR, October 3-7 2004.
Body:
New markers of candidate proteins in acute coronary disease – risk stratification and early detection of ischemic injury. Cardiovascular seminar, American Heart Association Annual Meeting. November 9-12, 2003.
Body:
Proteomics applied to heart disease – math to biomarkers. IPAM, Los Angeles, CA April 19-23, 2004.
Body:
Proteomics in heart disease: mechanism to biomarkers. Department of Pharmacology and Toxicology, Medical College of Wisconsin, Milwaukee, WI March 23, 2004.
Body:
Proteomics in Heart disease: mechanism to clinical biomarkers. Department of Physiology, ULCA, Los Angeles, CA April 20, 2004.
Body:
Troponin I and new serum biomarkers. 7th Joint Summit on markers of cardiology. Louisville, KY. October 2003.
Body:
O-GlcNAc: A New Paradigm for Modulating Cellular Responses to Stress. Society for Glycobiology. Honolulu, HI November 17-23, 2004.
Body:O-GlcNAc a mediator of cellular function: characterizing a family of O-GlcNAc binding proteins. Glycobiology Society, Honolulu, Hawaii November 17-23, 2004.
Body:
Increased O-GlcNAc in response to stress, a survival response of mammals. Glycobiology Society, Honolulu, Hawaii, November 17-23, 2004.
Body:
Nucleocytoplasmic Glycosylation, O-linked ?-N-acetylglucosamine, a Sensor of Cellular Stress. American Society for Biochemistry & Molecular Biology. 2004.
Body:
Analysis of the cellular proteome during angiogenesis: The NHLBI Proteomics Center at the Medical College of Wisconsin. XIIth International Congress on Genes, Gene Families and Isozymes, July 19-24, 2003, Berlin, Germany
Body:
US HUPO 2005
1st ANNUAL SYMPOSIUM
MAPPING THE HUMAN PROTEOME: From Tools to Functionality
Poster Presentation, Washington, DC, USA March 13-16, 2005
MAPPING THE HUMAN PROTEOME: From Tools to Functionality
Poster Presentation, Washington, DC, USA March 13-16, 2005
Body:
US HUPO 2006, From Genes to Function
Poster March 12-15, 2006
Poster March 12-15, 2006
Body:HUPO 4th World Congress & Proteomic Forum 2005
From Defining the Proteome to Understanding Function
NHLBI Poster, Munich, Germany 2005
From Defining the Proteome to Understanding Function
NHLBI Poster, Munich, Germany 2005
Body:
5-hydroxyuracil can form stable base pairs with all four bases in a DNA duplex. Chem Commun 2005(3): 400-02, 2005.
Title:Stanislaus R, Arthur JM, Rajagopalan B, Moerschell R, McGlothlen B, Almeida J.
Date:2006-05-28
Body:Schema for the integration of 2-D gel electrophoresis data with mass spectrometry analysis results. To be presented at the 54th ASMS Conference on Mass Spectrometry. Seattle, Washington, May 28-June 1, 2006.
Body:Microchip LC-MALDI-MS using multiple monolithic column arrays, to be presented at the 54th ASMS Conference on Mass Spectrometry, Seattle, WA, May 28-June 1, 2006.
Body:Matrix-free Laser Desorption/Ionization Mass Spectrometry using Porous Alumina Thin Film Structures, to be presented at the 54th ASMS Conference on Mass Spectrometry, Seattle, WA, May 28-June 1, 2006.
Body:Fabrication of plastic micro fluidic devices with monolithic column arrays for ESI-MS proteomic analysis by hot embossing with nickel masters, to be presented at the 54th ASMS Conference on Mass Spectrometry, Seattle, WA, May 28-June 1, 2006.
Body:Micro fluidic LC-MS Devices for Proteomic Analysis, 20th International Symposium on Micro scale Bioseparations, Amsterdam, Netherlands, January 22-26, 2006.
Title:Schwacke JH, Comte-Walters S, Reyes L, Krug EL, Garcia SR, Arthur JM, Voit EO, Stanislaus R, Almeida JS, Bland A, Shey K.
Date:2006-04-20
Body:Characterization of heart development by proteomic time series. National NHLBI Proteomics Investigator meeting, Stanford, CA (Poster). April 20-21, 2006.
Body:A comparative study of computational tools for LC-MS based proteomics. Workshop on statistics in Genomics and Proteomics, Monte Estoril, Portugal. Oct 5-8, 2005.
Body:
Poster: entitled An XML based software pipeline for LC-MS/MS proteomics. 8th Annual Conference of Computational Genomics, Boston, MA, Nov. 9-12, 2005.
Body:Comparative protein interaction networks for the PP2A-phosphatases. 3rd International Conference on Pathways, Networks, and Systems: Theory and Experiments, Rhodes, Greece, Oct 2-7, 2005
Body:Quantitative proteomics: Challenges in data analysis and statistical validation. Workshop on statistics in genomics and proteomics, Monte Estoril, Portugal, Oct. 5-8, 2005
Body:
Quantitative proteomics: Technology and clinical applications. Klinisch-Biochemisches Kolloquium, Univ of Zurich, Switzerland, Oct. 25, 2005.
Body:Quantitative proteomics and systems biology. Cell Biology Seminar-Reihe, Inst of Cell Biology Univ of Berne, Switzerland, Oct. 31, 2005.
Body:Systems biology and quantitative proteomics. EPFL - Lausanne, Switzerland, Nov 1, 2005
Body:Biomedicine in the Post-genomic Era Conference, the National Institute of Respiratory Disease, “Genomics and Proteomics Approaches to Respiratory Syncytial Virus Infection”. Mexico City, Mexico, December 1-3, 2005.
Body:Clinical and experimental features of human metaphneumovirus infection. Medical School of the Universidad National de Mexico, December, 2005.
Title:Kurosky A, Straub C, Pazdrak K, Young TW, Stafford SJ, Wu Z, Wiktorowicz JE, Haag AM, English RD, Soman KV.
Date:2009-03-13
Body:Proteome Analysis of the Peripheral Blood Human Eosinophil. AAAI Meeting – March 13-17, 2009 Washington, DC.
Body:Gel imaging and automated gel picking. Genomic solutions workshop, 10/19-20-2004. Houston, TX.
Body:
Involvement of Adhesion Signaling in GM-CSF-induced Activation of Eosinophils; Evidence of Shp2- Slp76-mediated Cross-talk Between the Bc Receptor and ICAM-1. AAAAI Meeting – Miami Beach, FL. March 3-7, 2006.
Title:Young T, Pazdrak K, Straub C, Stafford S, Starosta V, Brasier A, Wiktorowicz JE, Kurosky A.
Date:2006-04-19
Body:Profiling of Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF)-Dependent Signaling in Human Eosinophils. NHLBI Meeting Stanford – April 19-20, 2006 Palo Alto, CA.
Title:Young T, Pazdrak K, Straub C, Stafford S, Brasier A, Wiktorowicz JE, Spratt H, Kurosky A.
Date:2006-03-03
Body:Phosphoproteomic Profiling of Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF)-dependent Activation of Human Eosinophils. AAAAI Meeting – March 3-7, 2006 Miami Beach, FL.
Body:
Phosphoproteomic Characterization of Human Eosinophils Activated with GM-CSF. ABRF Meeting, Long Beach, CA February 12-14, 2006
Body:Probability-Based Protein Identification for Post-Translational Modifications and Amino Acid Variants Using Peptide Mass Fingerprint Data. Novel Aspect: A free web based search engine with a novel algorithm for peptide mapping featuring PTM and amino acid variant search. ASMS National Meeting, Seattle, WA. June 1, 2006.
Title:Lavatelli F, Perlman DH, McComb ME, Theberge R, Seldin DC, Connors LH, Merlini G, Skinner M, Costello CE.
Date:2006-06-01
Body:A Proteomic Approach to the Study of Systemic Amyloidosis. Novel Aspect: Proteomic investigations into amyloid infiltration of adipose tissue. Novel diagnostic tool for molecular typing of systemic amyloidoses. ASMS National Meeting, Seattle, WA. June 1, 2006.
Title:Perlman DH, Bauer S, Huang H, Garcia-Saura MF, Bryan NS, Fernandez BO, McComb ME, Feelisch M, Costello CE.
Date:2006-06-01
Body:Profiles of Cardioprotection: Integrated Proteomic and Metabonomic Study of the Effects of Nitrite Treatment on the Heart. Novel Aspect: Integrated proteomic/metabonomic study of the cardioprotective effects of nitrite, including the discovery of significant, nitrite-induced alterations to the cardiac proteome. ASMS National Meeting, Seattle, WA. June 1, 2006.
Body:
The joy and pain of 2D electrophoresis. American Electrophoresis Society Newsletter, vol. 9, no.4, p.2, 2004.
Body:
Consomic rat model systems for physiological genomics. Acta Physiol Scand 181:585-92, 2004.
Body:
ProMoST (Protein Modification Screening Tool): A web-based tool for mapping protein modifications on two-dimensional gels. Nucl Acids Res 32: W638-644, 2004.
Body:Two-dimensional gel-based approaches for the assessment of N-Linked and O-GlcNAc glycosylation in human and simian immunodeficiency viruses. Proteomics. 2008; 8(23-24):4919-30.
Body:Role of oxidative stress and nitric oxide in atherothrombosis. Front Biosci 1;13:5323-44, 2008.
Title:Nowak DE, Tian B, Jamaluddin M, Boldogh I, Vergara LA, Choudhary S, Brasier AR.
Date:2008-06-28
Body:RelA Ser276 phosphorylation is required for activation of a subset of NF-kappaB-dependent genes by recruiting cyclin-dependent kinase 9/cyclin T1 complexes. Mol Cell Bio 28(11): 3623-38, 2008.
Body:
Building Integrated Approaches for the Proteomics of Complex,
Dynamic Systems: NIH Programs in Technology and Infrastructure
Development. J Proteome Res, 2005.
Dynamic Systems: NIH Programs in Technology and Infrastructure
Development. J Proteome Res, 2005.
Title:Hueber W, Kidd BA, Tomooka BH, Lee BJ, Bruce B, Fries JF, Sonderstrup G,Monach P, Drijfhout JW, Venrooij WV, Utz PJ, Genovese M, Robinson WR.
Date:2005-09-01
Body:Antigen microarray profiling of autoantibodies in rheumatoid arthritis. Arth Rheum 52: 2645-2655, 2005.
Body:Multivariate phase space reconstruction by nearest neighbor embedding with different time delays. Physical Review E 72: 027205, 2005.
Body:Nearest neighbor embedding with different time delays. Physical review. E, Statistical, nonlinear, and soft matter physics. Phys Rev E Stat Nonlin Soft Matter Phys. 71(3 Pt 2B):037204, 2005.
Body:
alpha-Ketoisocaproate-induced hypersecretion of insulin by islets from diabetes-susceptible mice. Am J Physiol Endocrinol Metab. 289(2):E218-24, 2005.
Body:
Tripeptidyl peptidase (TPP)-II, an oligomeric protease complex from Arabidopsis. Plant Physiology 138(2): 1046-57, 2005.
Body:
Peptide Identification Using Peptide Amino Acid Attribute Vectors. J Proteome Res 3(4):813-20, 2004.
Body:
DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy. Nucleic Acids Res, 33, W376-381, 2005.
Body:
Simultaneous Quantification and Identification using 18O Labeling with an Ion Trap Mass Spectrometer and the Analysis Software Application "ZoomQuant". J Amer Soc Mass Spectrometry 16: 916-25, 2005.
Body:Multiplexed protein array platforms for analysis of autoimmune diseases. Ann Rev Immunol. 24:391-418, 2006.
Body:
Normalization and analysis of residual variation in 2D Gel Electrophoresis for quantitative differential proteomics. Proteomics 5(5): 1242-49, 2005.
Body:Optimization of a MALDI TOF-TOF Mass Spectrometer for Intact Protein Analysis. J Am Soc Mass Spectrometry 16: 482-490, 2005.
Title:Moellering DR, Ulasova E, Landar AL, Vestri HS, Wallace P, Darley-Usmar V, Garvey WT.
Date:2005-11-01
Body:
Proteomic Analysis of Skeletal Muscle Mitochondria in Type 2 Diabetes Reveals Altered Concentrations and Oxidation of Respiratory Chain Proteins. Diabetes 54 (Suppl. 2):A58, 2005.
Body:A uniform proteomics MS/MS analysis platform utilizing open XML file formats. Molec Systems Biol 10: 1038, 2005.
Body:A software suite for the generation and comparison of peptide arrays
from sets of data collected by liquid chromatography-mass spectrometry.
Mol Cell Proteomics 4: 1328-40, 2005.
Body:Investigation of neutral loss during collison-induced dissociation of peptide ions. Anal Chem 77: 4870-82, 2005.
Title:Tao WA, Wollscheid B, O'Brien R, Eng JK, Li X-J, Bodenmiller B, Watts JD, Hood L, Aebersold R.
Date:2005-08-02
Body:Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry. Nature Methods 2(8): 591-98, 2005.
Body:
Optimized protocols for the isolation of specific protein-binding peptides or peptoids from combinatorial libraries displayed on beads. Mol BioSyst 2: 25-35, 2006.
Body:Reddy MM, Kodadek T. Protein fingerprinting in complex mixtures using peptoid microarrays. Proc Natl Acad Sci USA 102: 12672-77, 2005.
Body:
Techniques: Oxidative cross-linking as an emergent tool for the analysis of receptor-mediated signaling events. Trends Pharmacol Sci 26: 210-217, 2005.
Body:A chemocentric view of genomics and proteomics. Curr Opin Chem Biol 9: 1-3, 2005.
Body:Genomic studies of transcription factor-DNA interactions. Curr Opin Chem Biol 9: 38-45, 2005.
Body:Transformation of low affinity lead compounds into high affinity protein capture agents. Chem Biol 11: 1127-37, 2004.
Body:Deterministic and stochastic models of NFκB pathway. Cardiovas Toxicology 7(4): 215-34, 2007.
Title:Lopez MF, Mikulskis A, Kuzdzal S, Golenko E, Petricoin EF 3rd, Liotta LA, Patton WF, Whiteley GR, Rosenblatt K, Gurnani P, Nandi A, Neill S, Cullen S, O’Gorman M, Sarracino D, Lynch C, Johnson A, Mckenzie W, Fishman D.
Date:2007-06-01
Body:A novel, high-throughput workflow for discovery and identification of serum carrier protein-bound peptide biomarker candidates in ovarian cancer samples. Clin Chem 53: 1067-74, 2007.
Body: The challenge of analyzing the proteome in humans with autoimmune diseases.
Ann N Y Acad Sci. 1062:61-8, 2005.
Title:Huang M, Ida H, Kamachi M, Iwanaga N, Izumi Y, Tanaka F, Aratake K, Arima M, Tamai M, Hida A, Nakamura H, Origuchi T, Kawakami A, Ogawa N, Sugai S, Utz PJ, Eguchi KJ.
Date:2007-01-24
Body:Detection of apoptosis-specific autoantibodies directed against granzyme B-induced cleavage fragments of the SS-B (La) autoantigen in sera from patients with primary Sjögren’s Syndrome. Clin Exp Immunol. 142:148-154, 2005.
Body:Reactive oxygen species generated by pollen grain’s NAD(P)H oxidase augment allergic ocular symptoms. J Allergy Clin Immunol 113(2): S164, 2004.
Title:Boldogh I, Bacsi A, Choudhury BK, Dharajiya N, Alam R, Hazra TK, Mitra S, Goldblum RM, Sur S.
Date:2005-08-01
Body:ROS generated by pollen NADPH oxidase provide a signal that augments antigen-induced allergic airway inflammation. J Clin Invest 115(8): 2169-79, 2005.
Body:
A method of effective depletion of albumin from cellular extracts: application to human myocardium. Methods in Molecular Biology Series: Cardiovascular Proteomics (ed. F. Vivanco) The Humana Press Inc. Totowa, NJ Methods Mol Biol. 357:67-70, 2007.
Body:Parameter Estimation in Modulated, Unbranched Reaction Chains within Biochemical Systems. Comput Biol Chem 29: 309-18, 2005.
Body:From XML to RDF: How Semantic Web Technologies Will Change the Design of ‘Omic’ Standards. Nature Biotechnology, 23(9): 1099-103, 2005.
Title:Das S, Sierra JC, Soman KV, Suarez G, Mohammad AA, Dang TA, Luxon BA, Reyes VE.
Date:2005-05-19
Body:Differential protein expression profiles of gastric epithelial cells following helicobacter pylori infection using protein chips. J Proteome Res 4: 920-30, 2005.
Body:Quantitative Analysis of Chemiluminescence Signals Using a Charge-Coupled Device Camera. Anal Biochem 345: 66-71, 2005.
Body:The Enhancement of PCR Amplification of a Random Sequence DNA Library by DMSO and Betaine: Application to in vitro Combinatorial Selection of Aptamers. J Biochem Biophysical Methods 64: 147-51, 2005.
Body:High-throughput flow cytometric screening of combinatorial chemistry bead libraries for proteomics and drug discovery.Advanced Biomedical and Clinical Diagnostic Systems III, edited by Tuan Vo-Dinh, Warren S. Grundfest, David A. Benaron, Gerald E. Cohn, Proc. of SPIE Vol. 5692, 216-223 (SPIE, Bellingham, WA, 2005).
Body:Transcriptional Stochasticity in Gene Expression. J Theoretical Biol 238: 348-67, 2006.
Body:Stochastic Regulation in Early Immune Response. Biophys J 90: 725-42, 2006.
Title:Bassett SE, Fennewald S, King DJ, Li Xin, Herzog N, Shope R, Aronson JF, Luxon, B, Gorenstein D.
Date:2004-07-20
Body:Combinatorial Selection and Edited Combinatorial Selection of Phosphorothioate Aptamers Targeting Human NF-kB Rel A/p50 and RelA/RelA. Biochemistry 43: 9105-115, 2004.
Body:Chemiluminescence-based electrophoretic mobility shift assay of RNA-protein interactions: application to binding of viral capsid proteins to RNA. J Virol Methods 131: 155-159, 2006.
Body:Controlling gas-phase reactions for efficient charge reduction electrospray mass spectrometry of intact proteins. JASMS 16(11): 1876-87, 2005.
Body:Local correlation of expression profiles with gene annotations- proof of concept for a general conciliatory method. Bioinformatics 21(7): 1037-45, 2004.
Body:Computation and analysis of time-dependent sensitivities in generalized mass action systems. J Theor Biol 236(1): 21-38, 2005.
Body:Rényi continuous entropy of DNA sequences. J Theor Biol 231(3): 377-88, 2004.
Body:Decoupling dynamical systems for pathway identification from metabolic profiles. Bioinformatics 20(11): 1670-81, 2004
Title:Mitas M, Almeida JS, Mikhitarian K, Gillanders WE, Lewin DN, Spyropoulos DD, Hoover L, Graham A, Glenn T, King P, Cole DJ, Hawes R, Reed CE, Hoffman BJ.
Date:2005-03-15
Body:
Accurate discrimination of Barrett’s esophagus and esophageal adenocarcinoma using a quantitative three-tiered algorithm and multi-marker real-time RT-PCR. Clin Cancer Res 11(6): 2205-14, 2005.
Title:Chen R, Yi EC, Donohoe S, Pan S, Eng J, Cooke K, Crispin DA, Lane Z, Goodlett DR, Bronner MP, Aebersold R, Brentnall TA.
Date:2005-10-04
Body:Pancreatic cancer proteome: The proteins that underlie invasion, metastasis, and immunologic escape. Gastroenterol 129: 1344-47, 2005.
Title:Desiere F, Deutsch E, King N, Nexvizhskii A, Mallick P, Eng J, Chen S, Eddes J, Loevenich S, Aebersold R.
Date:2006-01-01
Body:The Peptide Atlas Project. Nucleic Acids Res 34(Database issue: D655-D658, 2006.
Body:Statin therapy and autoimmune disease: from protein prenylation to immunomodulation. Nat Rev Immunol. 6 (5):358-70, 2006.
Body:Modeling and characterization of a carbon fiber emitter for electro spray ionization. J Micromechanics Microengineering, 16: 620-30, 2006.
Body:Plastic Microchip HPLC-MALDI-MS Using Monolithic Columns.
J Chromatography A 1111: 40-47, 2006.
Title:Cook LA, Schey KL, Wilcox MD, Dingus J, Ettling R, Nelson T, Knapp DR, Hildebrandt JD.
Date:2006-04-05
Body:Proteomic Analysis of Bovine Brain G Protein Gamma Subunit Processing Heterogeneity. Mol Cell Proteomics 5: 671-85, 2006.
Body:A tool to visualize and e electrospray ionization/mass spectrometry. Anal Chem 76:3856-60, 2004.
Body:Mass spectrometry-based proteomics. Nature 422(6928): 198-207, 2003.
Body:Analysis, statistical validation, and dissemination of large-scale proteomics datasets generated by tandem mass spectrometry. Review in DDT 9(4): 173-181, 2004.
Title:Nesvizhskii AI, Roos FF, Grossmann J, Vogelzang M, Eddes JS, Gruissem W, Baginsky S, Aebersold R.
Date:2006-04-05
Body:Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: Toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides. Mol Cell Proteomics. Apr;5(4):652-70, 2006. Epub 2005 Dec 12.
Body:A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem 75: 4646-58, 2003.
Title:Prakash A, Mallick P, Whiteaker J, Zhang H, Paulovich A, Flory M, Lee H, Aebersold R, Schwikowski B.
Date:2006-03-05
Body:Signal maps for mass spectrometry-based comparative proteomics. Mol Cell Proteomics 5 (3): 423-32, 2006.
Body:RNA polymerase II (Pol II)-TFIIF and Pol II-Mediator complexes: the major stable Pol II complexes and their activity in transcription initiation and reinitiation. Mol Cell Biol 24(4): 1709-20, 2004.
Body:Identification of TFB5, a new component of general transcription and DNA repair factor IIH. Nat Genetics 36(7): 707-13, 2004.
Title:Schmidt F, Donohoe S, Hagens K, Mattow J, Schaible UE, Kaufmann SHE, Aebersold R, and Jungblat PR.
Date:2004-01-03
Body:Complementary analysis of the mycobacterium tuberculosis proteome by two-dimensional electrophoresis and isotope coded affinity tag technology. Mol Cell Proteomics 3: 24-42, 2004.
Body:Quantitative proteomic analysis of Myc-induced apoptosis: A direct role for the Myr induction of the mitochondrial chloride ion channel, mtCLIC/CLIC4. J Biol Chem 281(5): 2750-56, 2005.
Body:ProbIDtree: an automated software program capable of identifying multiple peptides from a single collisioninduced dissociation spectrum collected by a tandem mass spectrometer. Proteomics 5: 4096-106, 2005
Body:Improving the accurate mass and chromatographic elution based identification of lower abundance proteins using Bayesian scoring. J Proteomic Res 4(6): 2174-84, 2005.
Title:Forbus J, Spratt H, Wiktorowicz J, Wu Z, Boldogh I, Denner L, Kurosky A, Brasier RC, Luxon B, Brasier AR.
Date:2006-05-06
Body:
Functional Analysis Of The Nuclear Proteome Of Human A549 Alveolar Epithelial Cells By HPLC- High Resolution 2D Gel Electrophoresis. Proteomics, 6(9):2656-72, 2006.
Title:Dunn SE, Youssef S, Goldstein MJ, Prod'homme T, Weber MS, Zamvil SS, Steinman L.
Date:2006-02-20
Body:Isoprenoids determine Th1/Th2 fate in pathogenic T cells, providing a mechanism of modulation of autoimmunity by atorvastatin. J Exp Med 203(2):401-12, 2006.
Title:Guerrero-Plata A, Casola A, Suarez G, Yu X, Spetch L, Peeples ME, Garofalo RP.
Date:2006-03-01
Body:Differential response of dendritic cells to human metapneumovirus and respiratory syncytial virus. Am J RespirCell Mol Biol 34: 320-329, 2006.
Body:Ab initio Base Pairing Energies of Uracil and 5-Hydroxy-Uracil with Standard DNA Bases at the BSSE-optimized MP2 theory level. Org Biomol Chem 4: 1741-45, 2006.
Title:Murray JK, Farooqi B, Sadowsky JD, Scalf M, Freund WA, Smith LM, Chen J, Gellman SH.
Date:2005-09-28
Body:Efficient Synthesis of a β -peptide Combinatorial Library with Microwave Irradiation. J Am Chem Soc 127(38): 13271-80, 2005.
Body:Indentification of mammalian cell lines using MALDI-TOF and LC-ESI-MS/MS mass spectrometry. J Am Soc Mass Spectrom 17: 490-99, 2006.
Body:p38 Mitogenactivated protein kinase activates eNOS in endothelial cells by an estrogen receptor α-dependent pathway in response to black tea polyphenols. Circ Res 96: 1072-78, 2005.
Body:S-glutathiolation by peroxynitrite of p21ras at cysteine-118 mediates its direct activation and downstream signaling in endothelial cells. FASEB J. 20(3):518-20, 2006.
Body:Nitric oxide and post-translational modification of the vascular proteome: S-Nitrosation of reactive thiols. Arterioscler Thromb Vasc Biol 26(6): 1207-1214, 2006.
Title:Di Bernardo D, Thompson MJ, Gardner TS, Chobot SE, Eastwood EL, Wojtovich AP, Elliot SJ, Schaus SE and Collins JJ.
Date:2005-03-04
Body:Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks. Nature Biotech 23:377-83, 2005.
Body:Aminoglycosides decrease peroxidase-1 activity by interfering with selenocysteine incorporation. J Biol Chem 281(6): 3382-3388, 2006.
Title:Jebanathirajah JA, Pittman JL,Thomson BA, Budnik BA, Kaur P, Rape M, Kirschner M, Costello CE, O'Connor PB.
Date:2005-12-16
Body:Characterization of a new qQq-FTICR mass spectrometer for post-translational modification analysis and top-down tandem mass spectrometry of whole proteins. J Am Soc Mass Spectrom 16: 1985-1999, 2005.
Body:Algorithms for automatic interpretation of high resolution mass spectra. J Amer Soc Mass Spectrom 17: 459-68, 2006.
Title:Kuster GM, Pimentel DR, Adachi T, Ido Y, Brenner DA, Cohen RA, Liao R, Siwik DA, Colucci WS.
Date:2005-03-08
Body:Alpha-adrenergic receptor-stimulated hypertrophy in adult rat ventricular myocytes is mediated via thioredoxin-1-sensitive oxidative modification of thiols on ras. Circulation 111: 1192-98, 2005.
Title:Matsui R, Xu S, Maitland KA, Hayes A, Leopold JA, Handy DE, Loscalzo J, Cohen RA.
Date:2005-07-12
Body:Glucose-6 phosphate dehydrogenase deficiency decreases the vascular response to angiotensin II. Circulation 112: 257-63, 2005.
Title:Matsui R, Xu S, Maitland-Toolan KA, Mastroianni R, Leopold JA, Handy DE, Loscalzo J, Cohen RA.
Date:2006-04-26
Body:Glucose-6-phosphate dehydrogenase deficiency decreases vascular superoxide anion and atherosclerotic lesions in apolipoprotein E -/- mice. Arterioscl Thromb Vasc Biol 26(4): 910-16, Epub 2006 Jan 26. PMID: 16439706, 2006.
Body:
Clinical Diagnosis of Familial Transthyretin Amyloidosis by Automated Data Acquisition and Processing with Quadrupole Orthogonal Time-of-Flight Mass Spectrometry, in Amyloid and Amyloidosis. Grateau G, Kyle RA, Skinner M, Editors. CRC Press: Boca Raton, FL. 348-350, 2005.
Body:Clinical Diagnosis of Familial Transthyretin Amyloidosis by
Automated Data Acquisition and Processing with Quadrupole Orthogonal
Time-of-Flight Mass Spectrometry, in Amyloid and Amyloidosis, Grateau
G, Kyle RA, Skinner M, Editors. CRC Press: Boca Raton, FL. 348-
350., 2005.
Automated Data Acquisition and Processing with Quadrupole Orthogonal
Time-of-Flight Mass Spectrometry, in Amyloid and Amyloidosis, Grateau
G, Kyle RA, Skinner M, Editors. CRC Press: Boca Raton, FL. 348-
350., 2005.
Title:O'Connor PB, Pittman JL, Thomson BA, Budnik BA, Cournoyer JC, Jebanathirajah J, Lin C, Moyer S.
Date:2006-02-01
Body:A new hybrid electrospray Fourier transform mass spectrometer: Design and performance characteristics. Rapid Commun Mass Spectrom 2006; 20: 259-266.
Body:Differentiation of aspartic and isoaspartic acids using electron transfer dissociation. J Am Soc Mass Spectrom 17: 15-19, 2006.
Body:Long-lived electron capture dissociation product ions experience radical migration via hydrogen abstraction. J Am Soc Mass Spectrom 17: 576-85, 2006.
Body:A minimum thickness gate valve with integrated ion optics for mass spectrometry. J Am Soc Mass Spectrom 16: 441-445, 2005.
Body:Impaired revascularization in a mouse model of type 2 diabetes is associated with the dysregulation of a complex angiogenic-regulatory network. Arterioscler Thromb Vasc Biol 25: 1603-09, 2005.
Body:Role of oxidative modifications in atherosclerosis. Physiol Rev 84: 1381–1478, 2004.
Body:Homocysteine and heart failure: a review of investigations from the Framingham Heart Study. Clin Chem Lab Med 43(10): 987–92, 2005.
Title:Xu S, Jiang B, Maitland KA, Bayat H, Gu J, Nadler JL, Corda S, Lavielle G, Verbeuren TJ, Zuccollo A, Cohen RA.
Date:2006-01-01
Body:The thromboxane receptor antagonist s18886 attenuates renal oxidant stress and proteinuria in diabetic apolipoprotein E-deficient mice. Diabetes 55 (1): 110-9, 2006.
Title:Xu S, Ying J, Jiang B, Guo W, Adachi T, Sharov V, Lazar H, Menzoian J, Knyushko TV, Bigelow D, Schöneich C, and Cohen RA.
Date:2006-06-01
Body:Detection of sequence-specific tyrosine nitration of manganese SOD and SERCA in cardiovascular disease and aging. Am J Physiol Heart Circ Physiol J290(6):H2220-7, 2006. [Epub ahead of print] PMID: 16399855
Title:Brasier AR, Spratt H, Wu Z, Boldogh S, Zhang Y, Garofalo RP, Casola A, Pashmi J, Haag A, Luxon B, Kurosky A.
Date:2005-02-21
Body:
Nuclear Heat Shock Response and Novel Nuclear Domain 10 Reorganization in Respiratory Syncytial Virus-Infected A549 Cells Identified By High Resolution 2D Gel Electrophoresis. UT Molecular Medicine Symposium, Translating Discoveries into Health. Houston, TX, February 21-22, 2005.
Body:
Bioinformatics and proteomics. The University of Texas System, Molecular Medicine Symposium, Translating Discoveries into Health, February 21-22, 2005.
Title:Hosakote YM, Guerrero-Plata A, Wu Z, Haag A, Spratt H, Stafford SJ, Castro S, Brasier AR, Kurosky A, Garofalo RP.
Date:2004-11-18
Body:
Newly Identified Proteins In The Lower Respiratory Tract By High Resolution 2D-Gel Electrophoresis And Peptide Mass Fingerprinting. NHLBI meeting, Bethesda, November 18-19, 2004.
Title:Hosakote YM, Guerrero-Plata A, Wu Z, Haag A, Spratt H, Stafford SJ, Castro S, Brasier AR, Kurosky A, Garofalo RP.
Date:2005-02-21
Body:
Newly Identified Proteins in the Lower Respiratory Tract by High Resolution 2D-Gel Electrophoresis and Peptide Mass Fingerprinting. UT Molecular Medicine Symposium, Houston, TX, February 21-22, 2005
Body:
Phosphoproteomic Studies of IL-5, IL-3, and GM-CSF Receptor Signaling in Human Blood Eosinophils. The University of Texas System, Molecular Medicine Symposium, Translating Discoveries into Health, February 21-22, 2005.
Body:
Composition based peptide identification. NIH/NIST/ISB Peptide Fragmentation and Identification Workshop, Gaithersburg, MD, May 3-4, 2004.
Body:
Qcomp: A rapid and accurate method for identifying peptides and proteins from partial, qualitative amino acid composition data. 52nd American Society for Mass Spectrometry Conference (ASMS), Nashville, TN, USA, May 23-27, 2004.
Body:
Analysis of the Cellular Proteome During Angiogenesis. 51st American Society for Mass Spectrometry Conference (ASMS), Montreal, QC. June 24, 2003.
Body:Protein Profiling: Quantitative Mass Spectrometry for Expression
Analysis. Genetic Engineering News Virtual Seminar Series, October 27, 2004.
Analysis. Genetic Engineering News Virtual Seminar Series, October 27, 2004.
Body:United States National Heart, Lung, and Blood Institute Proteomics Initiative. J Proteomics 9: 2285, 2005.
Body:
Identification of key proteins in asthma pathogenesis. ASBMB, Kansas City, MO May 2-4, 2003.
Title:Leary J, Szaniszlo P, Prow T, Yang X-B, Luxon B, Bassett S, Xin L, Gorenstein D.
Date:2003-03-09
Body:
Micro Genomics and Proteomics for Drug Discovery. Pittcon 2003, Orlando, FL March 9-13, 2003
Body:Stochastic regulation of NF-kB pathway. RECOM, Canada April 21, 2004.
Body:
Investigation of airway inflammation using genomics, proteomics and systems biology approaches. MD Anderson, Houston, TX, October 24-26, 2003.
Body:
Regulation of NF-kB responsive genes in a single cell. RECOM, Canada April 21, 2004.
Body:
Rapid High Performance Peptide Separations and Comprehensive Proteomics. 27th International Symposium on Capillary Chromatography, Riva Del Garda, Italy, May 31–June 4, 2004.
Body:Probability-based protein identification for post-translational modification and variation using peptide mass fingerprint data. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 3-7, 2007.
Body:Redundant data storage and data processing computer hardware solution for mass spectrometry laboratories on a budget. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 3-7, 2007.
Body:
Utilizing Silica Monolith in Microchips for Electrochromatographic Separations. 9th International Conference on Miniaturised Systems for Chemistry and Life Sciences (MicroTAS), Boston, MA, October 9-13, 2005.
Body:
Continuous Single Cell Lysis with Integrated Separation of Cell Content. 9th International Conference on Miniaturised Systems for Chemistry and Life Sciences (MicroTAS), Boston, MA, October 9-13, 2005.
Title:Yashoda YM, Guerrero-Plata A, Wu Z, Haag A, Spratt H, Stafford SJ, Castro S, Brasier AR, Kurosky A, Garofalo RP.
Date:2004-01-20
Body:Newly Identified Proteins in the Lower Respiratory Tract by High Resolution 2D-gel Electrophoresis and Peptide Mass Fingerprinting. 2004 Annual McLaughlin Fellowship Colloquium Abstract.
Body:
Novel Two Dimensional (Non-gel) Electrophoresis for Differential Proteomics. Electrophoresis Society in San Antonio, TX, November 6-11, 2004.
Body:Two Dimensional Electrophoresis in Liquid Media: Advances Using the Protein ProFilerTM for the Separation and Quantification of Fluorescence-Labeled Proteins and Peptides. Electrophoresis Society in Cincinnati, OH. October 30 - November 4, 2005.
Title:Deepthi Kolli D, Guerrero-Plata AM, Wu Z, English R, Cuttrell JW, Kurosky A, Garofalo RP.
Date:2006-03-11
Body:Protein Profile of Respiratory Syncytial Virus (RSV)-Infected Human Dendritic Cells (DCs) by 2DGels and Antibody Arrays, US HUPO 2006 Second Annual Conference, Boston, MA, March 11-15, 2006.
Body:Controlling Gas-Phase Reactions for Efficient Charge Reduction Electrospray Mass Spectrometry of Intact Proteins. 53rd American Society for Mass Spectrometry Conference (ASMS), San Antonio, TX, USA, June 5-9, 2005
Body:Microfluidic Device for Integrated Single Cell and Intracellular Studies. Poster presentation at annual meeting of North Carolina Tissue Engineering Interest Group (NCTEIG), Research Triangle Park, NC, USA, October 14, 2005.
Body:Homocysteine and heart failure: a review of investigations from the Framingham Heart Study. Presented at the 4th International Conference on Hyperhomocysteinemia, Saarland University, Saarbrucken, Germany, April 14-16, 2005.
Body:BUPID: Probability-Based Protein Identification by Searching Sequence Databases Using Peptide Mass Fingerprint Data. ASMS Annual Meeting, San Antonio, TX June 2005
Title:Theberge R, Budnik BB, Kaur P, Connors LH, Skinner M, O'Connor PB, Costello CE.
Date:2005-06-05
Body:Top Down Analysis of Transthyretin Using ESI FTMS. American Society of Mass Spectrometry Annual Meeting, in San Antonio, TX June 5-9, 2005.
Title:Adachi T, Weisbrod RM, Trucillo MP, Xu S, Ying J, Sharov V, Schoneich C, Cohen RA.
Date:2005-10-25
Body:Decreased smooth muscle response to nitric oxide (NO) in hyperglycemia. Involvement of neuronal NO synthase. Circ 2005; 112(17) [suppl]: II-315.
Body:A Software Shell for MS Data Conversion and Database Submission of MS Data. ASMS Annual Meeting, San Antonio, TX June 3-5, 2005.
Title:Sethuraman M, McComb ME, Huang H, Heibeck T, Costello CE, Richard A, Cohen RA.
Date:2005-04-05
Body:Isotope-Coded Affinity Tag (ICAT) Approach to the Proteomic Identification and Quantitation of Oxidant-Sensitive Cysteine Thiols in Complex Protein Mixtures. Keystone symposium on Proteomics and Bioinformatics, Keystone, Colo., April 5-11, 2005.
Title:Sethuraman M, Clavreul N, Heibeck T, Adachi T, Perlman DH, Huang H, McComb ME, Costello CE, Cohen RA.
Date:2005-06-03
Body:ICAT (Isotope-Coded Affinity Tag)-Based Quantification of Reversible Oxidative Post-Translational Thiol Modifications of H-Ras That Accompany Its Activation. ASMS Annual Meeting, San Antonio, TX June 3-5, 2005.
Body:Mass spectrometry analysis of cell cycle-regulatory transcription complexes in B cells. Keystone symposium on Proteomics and Bioinformatics, Keystone, Colo., April 5-11, 2005.
Body:Proteomics Analysis of Toll-Like Receptor 2 and Intracellular Factor XIIIA in Platelets: Functional Implications in Immune Defense. Abstract accepted for the AHA Annual Scientific Sessions, Dallas, TX, November 13-16, 2005.
Body:Anthracyclines suppress neuregulin/erbB signaling in isolated cardiac cells through selective receptor and ligand degradation. Abstract to be presented at AHA Annual Scientific Sessions, Dallas, TX, November 13-16, 2005.
Body:Identification of oxidative post-translational modifications of plasma albumin in pulmonary hypertension of sickle cell anemia. Annual meeting of the Comprehensive Sickle Cell Centers, Memphis, TN April 8 – 12, 2006.
Title:Odhiambo A, Perlman DH, McComb M, Huang H, Steinberg MH, Farber HW, Klings ES.
Date:2005-04-09
Body:Post-translational nitrosylation of plasma proteins in patients with pulmonary hypertension of sickle cell disease. National Sickle Cell Disease Program meeting, Cincinnati, Ohio. April 9-13, 2005.
Body:Design of the Cryogenic Fourier Transform Mass Spectrometer. American Society of Mass Spectrometry Annual Meeting, San Antonio, TX June 3-5, 2005
Body:Clinical Proteomics: Analysis of Post-Translational Modifications and Sequence Variants of Hemoglobin, US Human Proteome Organization, Washington, DC, March 12-15, 2005.
Body:Artifacts from Protein Sample Handling Identified by Mass Spectrometry, Association of Biomolecular Resource Facilities Conference, Savannah, GA, February 5-8, 2005.
Body:Direct Protein 2D-LC MALDI with On-Target Digestion For High-Throughput Proteomic Analyses. ASMS, San Antonio, TX June 3-5, 2005
Body:Design of a Preamplifier for Cryogenic Fourier Transform Mass Spectrometry using GaAs High Electron Mobility Transistors. ASMS Annual Meting, San Antonio, TX June 3-5, 2005.
Title:Kuster GM, Communal C, Weinberg EO, Trucillo M, Liao R, Cohen RA, Siwik DA, Colucci WS.
Date:2005-11-13
Body:Reactive oxygen species cause oxidative modification of reactive thiols on SERCA associated with sarcoplasmic reticulum calcium depletion and contractile failure. AHA Annual Scientific Sessions, Dallas, Texas, November 13-16, 2005.
Body:MASSPIKE (Mass Spectrum Interpretation and Kernel Extraction) for Biological Samples. American Societ of Mass Spectrometry Annual Meeting, San Antonio, TX June 3-5, 2005.
Body:Identification, Localization and Differentiation of O-GlcNAc and O-Phosphoryl Modified Peptides Using ECD and SORI CAD. ASMS Annual Meeting, San Antonio, TX June 3-5, 2005
Body:Structural characterization of toxin-binding gangliosides by TLC/VC-FTMS. ASMS Annual Meeting, San Antonio, TX June 3-5, 2005
Title:Huang H, McComb ME, Perlman DH, Budnik BA, Kaur P, Skelton TP, Chui DHK, O'Connor PB, Costello CE.
Date:2005-06-05
Body:Proteomics Approach for Identification of Hemoglobin Variants and Post-Translational Modifications. American Society of Mass Spectrometry Annual Meeting, San Antonio, TX June 5-9, 2005.
Body:Affinity Labeling and Solid Phase Capture Methods To Detect Sites of 3-Nitrotyrosine Protein Modifications. ASMS Annual Meeting, San Antonio, TX June 3-5, 2005
Body:Novel Machines that Control Cyclin A and the Cell Cycle of B cells Through Chromatin Remodeling and Transcription Factor Recruitment. American Society of Mass Spectrometry Annual Meeting, San Antonio, TX June 5-9, 2005
Body:Comparison of reverse-phase LC and SDS-PAGE for protein separation
followed by mass spectrometric analysis. Central New England
Chromatography Council, Northeastern University, Boston, May 12, 2005.
followed by mass spectrometric analysis. Central New England
Chromatography Council, Northeastern University, Boston, May 12, 2005.
Title:Dauly C, Odhiambo A, Perlman DH, Huang H, Budnik BA, Kaur P, O’Connor PB, Steinberg MH, Farber HW, Klings ES, McComb ME, Costello CE.
Date:2005-06-03
Body:Comparative Proteomics of Abundant Protein-depleted Plasma from Patients with Sickle Cell Disease-related Pulmonary Hypertension. ASMS Annual Meeting, San Antonio, TX June 3-5, 2005
Title:Costello CE, McComb ME, Hong Z, Huang H, Perlman DH, Theberge R, Cohen RA, O’Connor PB.
Date:2005-11-01
Body:Investigations of protein post-translational modifications using proteomic and structural approaches. Invited lecture at Malta II, the Symposium on Research and Education, in the Middle East, Malta in November 2005.
Body:Structural and functional studies of Glycans and Glycoconjugates. Invited lecture,
Pacifichem, Honolulu, HI in December 2005.
Pacifichem, Honolulu, HI in December 2005.
Body:Invited lecture, South East Regional Meeting of the American Chemical Society, held in Research Triangle, NC, November 2004, on application of mass spectral techniques to glycolipids and post-translationally modified peptides and proteins. Keystone, CO, April 5-11, 2005.
Body:Glycoproteomics. Keystone Symposia on “Proteomics and Bioinformatics” and “Systems and Biology,” Keystone, CO., April 5-11, 2005.
Body:Tandem Excitation Technique for Sequencing Biomolecules With Labile Post-Translational Modifications In Vibrational Cooling (VC) MALDI FTMS. ASMS Annual Meeting, San Antonio, TX June 3-5, 2005
Body:Use of the Filter Diagonalization Method in the Study of Space Charge Related Frequency Modulation in FTMS. Presented at the American Society of Mass Spectrometry, San Antonio, TX June 3-5, 2005.
Body:Mapping the Stimulus-specific Signaling Pathways Involved in THP-1 Cells Exposed to Porphyromonas gingivalis LPS vs. Fimbria vs. Live P.g. Novel Aspect: THP-1 monocytes sense live P.g. differently than its bacterial components. ASMS National Meeting, Seattle, WA. June 1, 2006.
Body:
The Proteomics of Proliferation and Malignancy: Analysis of Tumor-specific and Proliferation-specific Transcription Complexes in Normal and Malignant B Cells. Novel Aspects: Proteomics of resting, proliferating, and lymphomic B cells. New identifications represent important potential targets for chemotherapeutic intervention in non-Hodgkin’s lymphoma. ASMS National Meeting, Seattle, WA. June, 2006.
Body:A Software Shell for MS Data Processing and Management. Novel Aspect: A stand alone GUI based software shell for automated MS data file conversion and database search. ASMS National Meeting, Seattle, WA. June, 2006.
Title:Huang H, McComb ME, Perlman DH, Luo H, Skelton TP, Steinberg MH, Chui DHK, Costello CE.
Date:2006-06-01
Body:Pattern-based Identification of Protein Structural Variations by Mass Spectrometry. Novel Aspect: Pattern-based identification for important protein structural changes in biological samples by MALDI-TOF-MS and nanoLC-ESI-MS/MS coupled to an automated proteomics platform. ASMS National Meeting, Seattle, WA. June, 2006.
Body:A Software Application for MS Data Processing and Post Translational Modification Database Generation. Novel Aspect: Use of nominal and exact mass PTM databases for MS analyses of PTMs. ASMS National Meeting, Seattle, WA. June 1, 2006.
Body:Intact Protein Separation and Identification by Non-porous Reversed Phase Liquid Chromatography and Mass Spectrometry. Novel Aspect: Intact protein and peptide mapping analysis by reversed phase HPLC MALDI-TOF MS and comparison to SDS-PAGE electrophoresis. ASMS National Meeting, Seattle, WA. June, 2006.
Body:Structural Characterization of Glycosphingolipids and Toxin Receptor Gangliosides by IRMPD with TLC/VC-FTMS. Novel Aspect: The ceramide structures of the glycosphingolipids and gangliosides desorbed directly off the TLC plate were analyzed by SORI-CAD and IRMPD-FTMS. ASMS National Meeting, Seattle, WA. June 1, 2006.
Body:A Detailed Map of Oxidative Post-translational Modifications of Human p21ras using Fourier Transform Mass Spectrometry. Novel Aspect: The study provides an effective and efficient method to map and predict relative selectivity and specificity of oxidative post-translational modifications. ASMS National Meeting, Seattle, WA. June 1, 2006.
Body:Probing the Long-lived Radical Intermediates in Electron Capture Dissociation with a Double Resonance Experiment. Novel Aspect: Double resonance experiment revealed the direct correlation of the ECD product ions with a long-lived radical intermediate. ASMS National Meeting, Seattle, WA. June 1, 2006.
Body:Determination of High-Precision Isotope Ratios from Experimental Isotopic Distributions. Novel Aspect: Use of high-precision isotope ratio measurements with any kind of instrument for any given sample. ASMS National Meeting, Seattle, WA. June 1, 2006.
Body:Electronics for the Cryogenic Fourier Transform Mass Spectrometer. Novel Aspect: New electronics for the Fourier Transform Mass Spectrometer. ASMS National Meeting, Seattle, WA. June 1, 2006.
Body:Monolithic Column Plastic Microfluidic Device for Peptide Analysis Using Electrospray from a Channel Opening on the Edge of the Device. 53rd ASMS Conference on Mass Spectrometry, San Antonio, TX June 5 - 9, 2005.
Body:Proteomic analysis of skeletal muscle mitochondria reveals decreases in complex I and IV of the electron transport chain. 11th Annual Meeting of the Society for Free Radical Biology and Medicine, November 17-21, 2004.
Title:Moellering D, Vestri HS, Ulasova E, Krumdieck CL, Landar AL, Wallace P, Darley-Usmar VM, Garvey WT.
Date:2005-09-28
Body:Proteomic and biochemical analyses of diabetic human and obese rodent skeletal muscle mitochondria reveals altered concentration, oxidation, and activity of respiratory chain proteins. National meeting of the NHLBI Cardiovascular Proteomic Centers, Annapolis, MD. September 28-29, 2005.
Title:Moellering DR, Vestri HS, Ulasova E, Krumdieck CL, Wallace P, Landar AL, Darley-Usmar VM, Garvey WT.
Date:2005-09-16
Body:Proteomic and biochemical analyses of diabetic human and obese rodent skeletal muscle mitochondria reveals altered concentration, oxidation, and activity of respiratory chain proteins. 4th Conference on Mitochondrial Physiology - MiP2005; The Many Faces and Functions of an Organelle, 16-20 September 2005, Schröcken, Vorarlberg, Austria. http://www.mitophysiology.org/
Body:Molecular Profiling; Tissue Imaging and Top Down Identification of Ocular Lens Protein Modification, Proceedings of the 53rd ASMS Conference, San Antonio, TX June 5-9, 2005.
Title:Vestri HS, Bland AM, Dugan M, Moellering DR, D'Eugenio LR, Schey K, Arthur JM, Garvey WT.
Date:2005-04-20
Body:2D-Gel Analysis of Differentially Extracted Proteins from Human Skeletal Muscle. National meeting of the NHLBI Cardiovascular Proteomic Centers, Annapolis, MD. April 20-21, 2005.
Body:Repetitive Stunning, Hibernation and the Contractile Proteins Anne M Murphy, Cardiovascular Seminar. American Heart Association Meeting, New Orleans, CA., Nov. 2004.
Body:Proteomic analysis of early rheumatoid arthritis, 15th International Rheumatology Symposium of the Japanese College of Rheumatology, Nagasaki, Japan
Body:Fibrinogen-induced arthritis in mice as a model for rheumatoid arthritis. FOCIS, 6th annual meeting, June 1-5, 2006 San Francisco, CA
Body:Antigen Specific Tolerance and Autoimmune Vaccines in the Clinic. FOCIS, San Francisco, CA June 2, 2006.
Body:Electrokinetic Microfluidics at Extreme Scales, Keynote Address, Electrostatics Society Annual Meeting, June 6-9, 2006, Berkely, CA 2006.
Body:Opening Speech at ISAC (International Society of Analytical Cytology): Single Cell Phospho-Profiling in Signaling, Disease, and Drug Screening.
Body:Large-Scale Single-Cell Phospho-Profiling of Mouse and Human SLE Reveals Mechanistic Signatures of Prognosis, FOCIS, 6th Annual Meeting, June 1-5, 2006, San Francisco, CA
Body:Prediction of labor for pregnant women using high-resolution mass spectrometry data. Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE): 332-339, 16-18 October 2006, Arlington, Virginia, USA.
Title:Gulcicek EE, Colangelo CM, McMurray W, Stone K, Wu B, Wu T, Spratt H, Kurosky A, Zhao H, Williams K.
Date:2005-11-01
Body:Proteomics and the Analysis of Proteomic Data. In Current Protocols in Bioinformatics (A. D. Baxevanis, D. B. Davison, R. D. M. Page, G. A. Petsko, L. D. Stein and G. D. Stormo, eds) pp 13.1.1 - 13.1.31. John Wiley & Sons Inc, Hoboken, NJ.
Body:Heterogeneous ribonucleaoprotein C1/C2, MeCP1, and SWI/SNF form a chromatin remodeling complex at the beta-globin lucus control region. Proc Natl Acad Sci 102: 15012-15017, 2005.
Body:Design and Synthesis of A Solid Phase Fluorescent Mass Tag. J Separation Sci 28: 1812-1817, 2005.
Body:Quantitative analysis of membrane proteins from breast cancer cell lines BT474 and MCF7 using multistep solid phase mass tagging and 2D LC/MS. J Proteome Res 4: 1427-33, 2005.
Title:Yu J, deMuinck ED, Zhuang Z, Drinane M, Kauser K, Rubanyi GM, Qian HS, Murata T, Escalante B, Sessa WC.
Date:2005-08-02
Body:Endothelial nitric oxide synthase is critical for ischemic remodeling, mural cell recruitment, and blood flow reserve. Proc Natl Acad Sci 31: 10999-11004, 2005.
Body:Engineered Allosteric Ribozymes that Respond to Specific Divalent Metal Ions. Nucleic Acids Res 33: 622-31, 2005.
Body:Gene expression control: Harnessing RNA switches
Gene Ther 12: 725-726, 2005
Body:Phosphoproteome analysis of HeLa cells using stable isotope labeling with amino acids in cell culture (SILAC). J Proteome Res 4: 1661-71, 2005.
Body:The Curved-Field Reflectron: PSD and CID without Scanning, Stepping or Lifting, Int. J. Mass Spectrom. 240: 169-82, 2004.
Body:Tandem Time-of-Flight (TOF/TOF) Mass Spectrometry and Proteomics. J Mass Spectrom Soc. Japan 53: 7-17, 2004.
Body:
Chronic xanthine oxidase inhibition prevents myofibrillar protein oxidation and preserves cardiac function in a transgenic mouse model of cardiomyopathy. Am J Physiol Heart Circ Physiol. 289(4): H1512-8, 2005.
Body:A robust, streamlined and reproducible method for proteomic analysis of serum by delipidation, albumin and IgG depletion, and 2-dimensional gel electrophoresis. Proteomics 5(10):2656-64, 2005.
Body:Improvements in two-dimensional gel electrophoresis by utilizing a low cost in-house neutral pH SDS-PAGE electrophoresis system. Proteomics 5: 2656-64, 2005.
Body:Broad-Based Proteomic Strategies: A Practical Guide to Proteomics and Functional Screening. J Physiol 563: 1-6, 2005.
Body:Optimization of IPG Strip Equilibration for the Basic Membrane Protein mABC1, Proteomics 5(11): 2892-5, 2005.
Body:Assessing reproducibility of a protein dynamics study using in vivo labeling and liquid chromatography tandem mass spectrometry. Analytical Chem 77: 2739-44, 2005.
Body:Role of chromatographic techniques in proteomic analysis. J Chromatogr B 815: 51-63, 2005.
Body:
Multidimensional liquid chromatography separation of intact proteins by chromatographic focusing and reversed phase of the human serum proteome: optimization and protein database. Mol Cell Proteomics. 5(1): 26-34, 2006.
Body:Fast and slow skeletal troponin I in serum from patients with various skeletal muscle disorders. Clin Chem 51: 966-72, 2005.
Body:Perturbations in O-GlcNAc Protein Modification Cause Severe Defects in Mitotic Progression and Cytokinesis. J Biol Chem 280: 32944-956, 2005.
Body:
Clinical Proteomics - Technologies to define and diagnose heart disease in “Molecular Mechanisms of Cardiac Hypertrophy and Failure” (R. Walsh, ed) pg 485-502, 2005.
Body:Structural Analysis of a Highly Acetylated Protein Using a Curved-Field Reflectron Mass Spectrometer. Proteomics 5: 2288-96, 2005.
Body:Approach for determining protein ubiquitination sites by MALDI-TOF mass spectrometry. Anal Chem 77: 1458-66, 2005.
Body:Direct identification of ubiquitination sites on ubiquitin-conjugated CHIP using MALDI mass spectrometry. J Proteome Res. 4(5):1554-60, 2005.
Body:Discovery of disease-induced post-translational modifications in the cardiac contractile proteins. Curr Opin Mol Ther 7(3): 234-9, 2005.
Title:Kanter JL, Narayana S, Ho PP, Catz I, Warren KG, Sobel RA, Steinman L, Robinson WH.
Date:2006-01-01
Body:Lipid microarrays identify key mediators of autoimmune brain inflammation.
Nat Med 12(1):138-43.
Nat Med 12(1):138-43.
Body:Antigen-specific therapies in multiple sclerosis: going beyond proteins and peptides. Int Rev Immunol 24(5-6):415-46, 2005.
Title:Platten M, Ho PP, Youssef S, Fontoura P, Garren H, Hur EM, Gupta R, Lee LY, Kidd BA, Robinson WH, Sobel RA, Selley ML, Steinman L.
Date:2005-11-04
Body:Treatment of autoimmune neuroinflammation with a synthetic tryptophan metabolite. Science 310(5749):850-5, 2005
Body:Design of effective immunotherapy for human autoimmunity. Nature 435 (7042): 612-9, 2005.
Body:Blocking adhesion molecules as therapy for multiple sclerosis: natalizumab.
Nat Rev Drug Discov (6): 510-8, 2005.
Nat Rev Drug Discov (6): 510-8, 2005.
Body:Virtues and pitfalls of EAE for the development of therapies for multiple sclerosis.
Trends Immunol 26(11): 565-71, 2005.
Trends Immunol 26(11): 565-71, 2005.
Title:Ho PP, Fontoura P, Platten M, Sobel RA, DeVoss JJ, Lee LY, Kidd BA, Tomooka BH, Capers J, Agrawal A, Gupta R, Zernik J, Yee MK, Lee BJ, Garren H, Robinson WH, Steinman L.
Date:2005-11-01
Body:A suppressive oligodeoxynucleotide enhances the efficacy of myelin cocktail/IL-4-tolerizing DNA vaccination and treats autoimmune disease.
J Immunol 175(9):6226-34, 2005.
J Immunol 175(9):6226-34, 2005.
Body:Proteomic analysis of rheumatoid arthritis, McGill University Arthritis Symposium, Montreal, Canada, 2006.
Body:On-chip millionfold sample stacking using transient isotachophoresis. Anal Chem 78(7):2319-27, 2006.
Body:Therapeutic angiogenesis: another passing phase? Circ Res. 98(9):1115-6, 2006.
Body:Expression of vascular endothelial growth factor receptor 1 in bone marrow-derived mesenchymal cells is dependent on hypoxia-inducible factor 1.
J Biol Chem 281(22):15554-63, 2006.
J Biol Chem 281(22):15554-63, 2006.
Body:Development of novel therapeutic strategies that target HIF-1.
Expert Opin Ther Targets 10(2):267-80, 2006.
Expert Opin Ther Targets 10(2):267-80, 2006.
Body:Cardioprotective role of the mitochondrial ATP-binding cassette protein 1.
Circ Res 97(8):740-2, 2005.
Circ Res 97(8):740-2, 2005.
Body:Identification of protein ubiquitylation by electrospray ionization tandem mass spectrometric analysis of sulfonated tryptic peptides. Anal Chem 78(11):3681-7, 2006.
Body:Proteomic evaluation reveals that olfactory ensheathing cells but not Schwann cells express calponin. Glia 53(4):434-40, 2006.
Title:Wilkins MR, Appel RD, Van Eyk JE, Chung MC, Gorg A, Hecker M, Huber LA, Langen H, Link AJ, Paik YK, Patterson SD, Pennington SR, Rabilloud T, Simpson RJ, Weiss W, Dunn MJ.
Date:2006-01-01
Body:Guidelines for the next 10 years of proteomics. Proteomics 6(1):4-8, 2006.
Body:Mechanisms of excitation-contraction coupling in an integrative model of the cardiac ventricular myocyte. Biophys J 90(1):77-91, 2006.
Body:Multi-scale models of local control of calcium induced calcium release.
Prog Biophys Mol Biol 90(1-3):136-50, 2006.
Prog Biophys Mol Biol 90(1-3):136-50, 2006.
Body:Myc target transcriptomes. Curr Top Microbiol Immunol 302:145-67, 2006.
Body:HIF-1-mediated expression of pyruvate dehydrogenase kinase: a metabolic switch required for cellular adaptation to hypoxia. Cell Metab 3(3):177-85, 2006.
Body:One-dimensional gel electrophoresis mass spectrometry and two-dimensional liquid chromatography mass spectrometry analysis of mouse bronchoalveolar lavage proteome. Proteomics 5: 4608-24, 2005.
Body:STAT3 NH2-terminal acetylation is activated by the hepatic acute-phase response and required for IL-6 induction of angiotensinogen. Gastroenterology 129(5):1616-32, 2005.
Body:
Chemiluminescence-based electrophoretic mobility shift assay of heparin-protein interactions. Anal Biochem 349(1):156-8, 2006.
PMID: 16352290
Title:Ferguson MR, Rojo DR, Somasunderam A, Thiviyanathan V, Ridley BD, Yang X, Gorenstein DG.
Date:2006-06-09
Body:Delivery of double-stranded DNA thioaptamers into HIV-1 infected cells for antiviral activity. Biochem Biophys Res Commun 344(3):792-7, 2006.
Body:Human metapneumovirus induces a profile of lung cytokines distinct from that of respiratory syncytial virus. J Virol 79(23):14992-7, 2005.
Body:Rapid identification of the pharmacophore in a peptoid inhibitor of the proteasome regulatory particle. Chem Comm 1064-1066, 2008.
Body:Use of peptide analog diversity library beads for increased depth of proteomic analysis: Application to cerebrospinal fluid. J Proteome Res 7: 1922-31, 2008.
Body:High-throughput evaluation of relative cell permeability between peptoids and peptides. Bioorg Med Chem 16: 5853-61, 2008.
PMID: 18490170
PMID: 18490170
Body:Proteomic Biomarker Identification for Diagnosis of Early Relapse in Ovarian Cancer. J Bioinform Comput Biol 4: 1159-1179, 2006.
Title:Pazdrak K, Young TW, Stafford S, Olszewska-Pazdrak B, Straub C, Starosta V, Brasier A, Kurosky A.
Date:2008-03-15
Body:Crosstalk between ICAM-1 and GM-CSF Receptor Signaling Modulates Eosinophil Survival and Activation. J Immunol 180: 4182-4190, 2008.
Body:
NMR Assignments of the Yellow Fever Virus Envelope Protein Domain
III. Biomolecular NMR Assignments, 1, 49-50, 2007.
III. Biomolecular NMR Assignments, 1, 49-50, 2007.
Body:The detection limit of a Gd3+-based T1 agent is substantially reduced when targeted to a protein microdomain. Mag Res Imaging 26: 608-617, 2008.
Title:Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley B, et al.
Date:2008-02-26
Body:Human Proteinpedia: A portal for sharing and integrations of human protein data. Nature Biotechnol 26(2): 164-7, 2008.
Body:
Synthesis and evaluation of superparamagnetic silica particles for extraction of glycopeptides in the microtiter plate format. Anal Chem 80(4): 1228-34, 2008.
Body:
An array of possibilities for the study of autoimmunity. Nature 435: 605-611, 2005.
Title:Arrell DK, Elliott ST, Kane LA, Guo Y, Ko YH, Pedersen PL, Robinson J, Murata M, Murphy AM, Marbán E, Van Eyk JE.
Date:2006-09-29
Body:Proteomic analysis of pharmacological preconditioning: novel protein targets converge to mitochondrial metabolism pathways. Circ Res 29;99(7):706-14, 2006.
Body:
Optimization of cardiac troponin I pull-down by IDM affinity beads and SELDI. Methods Mol Biol. 357:91-102, 2007.
Body:LC-MS solvent composition gradient monitoring and gradient alignment using mobile phase tracer molecules. J Chromatogr B Analyt Technol Biomed Life Sci 829: 107-14, 2005.
Body:
Sweet insights into learning and memory. Nature Chem Biol 2: 67-68, 2006.
Body:
Fluorescent cell barcoding in flow cytometry allows high-throughput drug screening and signaling profiling. Nat Methods 3(5): 361-8, 2006.
Body:Chemistry of periodate-mediated cross-linking of 3,4-dihydroxyphenlanine (DOPA)-containing molecules to proteins. J Amer Chem Soc 128: 15228-15235, 2006.
Body:
Isolation and characterization of coactivator-binding peptoids from a combinatorial library. Mol BioSyst 2: 568-579, 2006.
Body:
Coupling of protein HPLC to MALDI-TOF MS using an on-target device for fraction collection, concentration, digestion, desalting, and matrix/analyte cocrystallization. Anal Chem 79: 2058-2066, 2007.
Body:Widespread, but non-identical, association of proteasomal 19S and 20S proteins with yeast chromatin. J Biol Chem 281: 27346-27355, 2006.
Body:
Proteolytic turnover of Gal4 is not required for function in vivo. Nature 442: 1054-1057, 2006.
Title:Geho D, Lahar N, Gurnani P, Huebschman M, Herrmann P, Espina V, Shi A, Wulfkuhle J, Garner H, Petricoin III E, Liotta LA, Rosenblatt KP.
Date:2005-05-05
Body:
Pegylated, steptavidin-conjugated quantum dots are effective detection elements for reverse phase protein microarrays. Bioconjugate Chemistry 16: 559-66, 2005.
Body:
Secreted Proteome Profiling In Human RPE Cell Cultures Derived from Donors with Age Related Macular Degeneration and Age Matched Healthy Donors. J. Proteome Res. 5(10): 2599-2610, 2006.
Body:Mixed Isotope Photaffinity Reagents for Identification of Small-Molecule Targets by Mass Spectrometry. Angewandte Chemie 45:4329-4333, 2006.
Title:Pellitteri-Hahn MC, Warren MC, Didier DN, Winkler EL, Mirza SP, Greene AS, Olivier M.
Date:2006-06-13
Body:Improved mass spectrometric proteomic profiling of the secretome of rat vascular endothelial cells. J Proteome Res 5(10):2861-4, 2006.
Body:
Ionizable Isotopic Labeling Reagent for Relative Quantification of Amine Metabolites by Mass Spectrometry. Anaytical Chem 78:6398-6403, 2006.
Body:Use of the filter diagonalization method in the study of space charge related frequency modulation in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. J Amer Soc Mass Spectrom 17: 1428-1436, 2006.
Title:Galasso G, Schiekofer S, Sato K, Shibata R, Handy DE, Ouchi N, Leopold JA, Loscalzo J, Walsh K.
Date:2006-01-02
Body:
Impaired angiogenesis in glutathione peroxidase-1–deficient mice is associated with endothelial progenitor cell dysfunction. Circ Res 2006; 98, 254-261, 2006.
Title:Dhingra R, Larson MG, Benjamin EJ, Lipinska I, Gona P, Corey D, Keaney
JF Jr, and Vasan RS.
Date:2006-02-02
Body:
Cross-sectional correlates of serum heat shock protein 70 in the community. Am J Hypertension 19: 227-231, 2006.
Body:Protein separation and characterization by np-RP-HPLC followed by intact MALDI-TOF mass spectrometry and peptide mass mapping analyses. J Proteome Res 5(7): 1688-1700, 2006.
Body:
Detecting deamidation products in proteins by electron capture dissociation. Anal Chem 78: 1264-1271, 2006.
Title:Kathiresan S, Larson MG, Vasan RS, Guo C-Y, Gona P, Keaney JF Jr, Wilson PWF, Newton-Cheh C, Musone SL, Camargo AL, Drake JA, Levy D, O’Donnell CJ, Hirschhorn JN, Benjamin EJ.
Date:2006-03-21
Body:Contribution of clinical correlates and 13 C-reactive protein gene polymorphisms to interindividual variability in serum C-reactive protein level. Circulation 113: 1415-1423, 2006.
Body:Comparison of charge state determination methods for high resolution mass spectra. IEEE International Conference on Granular Computing 10-12: 550 – 553, 2006.
Body:Circulating biomarkers in acute coronary syndromes: Something different or more of the same? Circulation 112: 778-780, 2005.
Body:Neuregulin activates erbB2-dependent src/FAK signaling and cytoskeletal remodeling in isolated adult rat cardiac myocytes. J Mol Cell Cardiol 41(2): 228-35, 2006.
Body:Microarray analysis of Akt1 activation in transgenic mouse hearts reveals transcript expression profiles associated with compensatory hypertrophy and failure. Physiol Genomics 27: 156-170, 2006.
Body:Biomarkers of cardiovascular disease. Circulation 113: 2335-2362, 2006.
Body:
Hydrogen peroxide restrains endothelium-derived nitric oxide bioactivity—Role for iron-dependent oxidative stress. Free Radic Biol Med 41: 681–688, 2006.
Title:Dupuis J, Larson MG, Vasan RS, Massaro JM, Wilson PWF, Lipinska I, Corey D, Vita JA, Keaney JF Jr, Benjamin EJ.
Date:2005-10-03
Body:Genome scan of systemic biomarkers of vascular inflammation in the Framingham Heart Study: Evidence for susceptibility loci on 1q. Atherosclerosis 182: 307–314, 2005.
Body:Nitric-oxide-induced vasodilatation: regulation by physiologic S-glutathiolation and pathologic oxidation of the sarcoplasmic endoplasmic reticulum calcium ATPase. Trends Cardiovasc Med 16: 109-114, 2006.
Body:
Preconditioning enters the era of "physiological proteomics." Circ Res 99 (7): 663-665, 2006.
Body:
The effect of radical trap moieties on electron capture dissociation spectra of substance P. J Am Soc Mass Spectrom 17: 1428-1436, 2006.
Title:Fox CS, Guo CY, Larson MG, Vasan RS, Parise H, O'Donnell CJ, D'Agostino RB, Sr, Keaney JF Jr, Benjamin EJ.
Date:2006-05-15
Body:Relations of inflammation and novel risk factors to valvular calcification. Am J Cardiol 97(10):1502-5, 2006.
Title:Pimentel DR, Adachi T, Ido Y, Heibeck T, Jiang B, Lee Y, Melendez JA, Cohen RA, Colucci WS.
Date:2006-06-03
Body:
Strain-stimulated hypertrophy in cardiac myocytes is mediated by reactive oxygen species-dependent ras glutathiolation. J Mol Cell Cardiol 41: 613-622, 2006.
Title:Clavreul N, Bachschmid MM, Hou X, Shi C, Idrizovic A, Ido Y, Pimentel D, Cohen RA.
Date:2006-08-24
Body:S-glutathiolation of p21ras by peroxynitrite mediates endothelial insulin resistance caused by oxidized low-density lipoprotein. Arterioscler Thromb Vasc Biol 26 (11):2454-61, 2006.
Body:Detailed map of oxidative post-translational modifications of human P21Ras using Fourier transform mass spectrometry. Anal Chem. 78(14):5134-42, 2006.
Body:
Reverse engineering gene regulatory networks. Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. New York, Wiley, 2005.
Body:
O-GlcNAc modification of nucleocytoplasmic proteins and diabetes. Med Mol Morphol 38: 84-91, 2005.
Body:
Phosphoproteome analysis of HeLa cells using stable isotope labeling with amino acids in cell culture (SILAC). J Proteome Res 4: 1661-1671, 2005.
Title:Bilchick KC, Duncan JG, Ravi R, Takimoto E, Champion HC, Gao WD, Stull LB, Kass DA, Murphy AM.
Date:2007-01-02
Body:Heart failure-associated alterations in troponin I phosphorylation impair ventricular relaxation-afterload and force-frequency responses and systolic function. Am J Physiol Heart Circ Physiol. 292(1):H318-25, 2007.
Title:Bose R, Molina H, Patterson AS, Bitok JK, Periaswamy B, Bader JS, Pandey A, Cole PA.
Date:2006-06-27
Body:Phosphoproteomic analysis of Her2/neu signaling and inhibition. Proc Natl Acad Sci U S A 103: 9773-9778, 2006.
Title:An E, Lu X, Flippin J, Devaney JM, Halligan B, Hoffman EP, Strunnikova N, Csaky K, Hathout Y.
Date:2006-10-05
Body:
Secreted Proteome Profiling In Human RPE Cell Cultures Derived from Donors with Age Related Macular Degeneration and Age Matched Healthy Donors. J Proteome Res 5(10): 2599-2610, 2006.
Body:Automated Approach to Small Volume Discontinuous Density Gradients. Bio Technigues 41(5): 625-7, 2006.
Title:Lee DS, Evans JC, Robins SJ, Wilson PW, Albano I, Fox CS, Wang TJ, Benjamin EJ, D’Agostino RB, Vasan.
Date:2007-01-27
Body:Gamma glutamyl transferase and metabolic syndrome, cardiovascular disease and mortality risk: The Framingham Heart Study. Arterioscler Thromb Vasc Biol 27(1):127-33, 2007.
Body:Evaluation of an on-target sample preparation system for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry in conjunction with normal-flow peptide high-performance liquid chromatography for peptide mass fingerprint analyses. Rapid Commun Mass Spectrom. 21(1):44-58, 2007.
Title:Rabinovich PM, Komarovskaya ME, Ye Z, Imai C, Campana D, Bahceci E,Weissman SM.
Date:2006-10-17
Body:
Synthetic Messenger RNA as a Tool for Gene Therapy. Human Gene Therapy 17: 1027-1035, 2006.
Body:Effective removal of albumin from serum. Proteomics 5: 3831-3835, 2005.
Body:A computational model integrating electrophysiology, contraction and mitochondrial bioenergetics in the ventricular myocyte. Biophys J 91: 1564-1589, 2006.
Body:
Proteomics and heart disease: identifying biomarkers of clinical utility. Expert Rev Proteomics 3: 237-249, 2006.
Body:
A rapid, economic and reproducible method for human serum delipidation, albumin and IgG removal for proteomic analysis. Methods Mol Biol. 357:365-71, 2007.
Body:
Posttranslational, reversible O-glycosylation is stimulated by high glucose and mediates plasminogen activator inhibitor-1 gene expression and Sp1 transcriptional activity in glomerular mesangial cells. Endocrinology 147: 222-231, 2006.
Title:Gronborg M, Kristiansen TZ, Iwahori A, Chang R, Reddy R, Sato N, Molina H, Jensen ON, Hruban RH, Goggins MG, Maitra A, Pandey A.
Date:2006-01-05
Body:
Biomarker discovery from pancreatic cancer secretome using a differential proteomic approach. Mol Cell Proteomics 5: 157-171, 2006.
Body:Polymeric Microfluidic Devices for Proteomic Analysis, HUPO 4th Annual World Congress, August 28-September 1, 2005, Munich; Molecular and Cellular Proteomics 4(8): S306, 2005.
Title:Moellering DR, Ulasova E, Landar AL, Vestri HS, Wallace P, Darley-Usmar V, Garvey WT.
Date:2005-06-10
Body:Proteomic Analysis of Skeletal Muscle Mitochondria in Type 2 Diabetes Reveals Altered Concentrations and Oxidation of Respiratory Chain Proteins. 65th Annual Meetings of the American Diabetes Association, San Diego CA, June 10-14, 2005.
Body:Plastic microchip HPLC-MALDI/MS using monolithic columns. 53rd ASMS Conference on Mass Spectrometry, San Antonio, TX, June 5 - 9, 2005.
Body:Insights in the design and operation of the MAP Kinase cascade. SIAM-SEAS Conference, Charleston, SC, March-25-26, 2005.
Body:Metabolic modeling with time series data. Workshop: Unraveling the Function and Kinetics of Biochemical Networks, Indiana University, May 9-11, 2005.
Body:Metabolic Networks I: The Challenge of Complexity. Summer School on NanoScience and Systems Biology,“ LMU Gene Center, Grosshadern-Martinsried Life Sciences Campus, July 25-28, 2005.
Body:Metabolic Networks II: Case Studies. Summer School on NanoScience and Systems Biology, U Gene Center, Grosshadern-Martinsried Life Sciences Campus, July 25-28, 2005
Body:Systems modeling. First International Conference of AB3C, the Brazilian Association for Bioinformatics and Computational Biology. Caxambu, Brazil, October 4-7, 2005.
Title:Colangelo C, Lian Z, Stone K, Wu T, Berberich M, Lian J, LoPresti M, Weissman S, Williams KR.
Date:2004-05-04
Body:
Global Proteomics Approaches to Understanding Hematopoietic
Differentiation” Applied Biosystems Discovery Proteomics 2004, May 4, 2004.
Differentiation” Applied Biosystems Discovery Proteomics 2004, May 4, 2004.
Title:Colangelo C, Lian Z, Stone K, Wu T, Berberich M, Lian J, LoPresti M, Weissman S, Williams KR.
Date:2004-05-23
Body:Global Proteomics Approaches to Understanding Hematopoietic Differentiation. 52nd ASMS Conference on Mass Spectrometry and Allied Topics, May 23 - 27, 2004.
Title:Rinehart J, Maksimova YD , Tanis JE, Stone KE, Hodson CA, Zhang J, Risinger M, Pan W, Wu D, Colangelo CM, Forbush B, Joiner CH, Gulcicek EE, Gallagher PG, Lifton RP.
Date:2009-05-31
Body:Quantitative phosphoproteomics identifies sites in K-Cl cotransporters that regulate cell volume and neuronal excitation. 57th ASMS Conference on Mass Spectrometry, May 31 - June 4, 2009, Philadelphia, PA.
Body:Biotinyl Dimedone (BD) -- A Novel Reagent for Studying Protein Sulfenic Acids. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:In-situ Mass Spectrometry of Levitated Droplets Using Charge Assisted Laser Desorption Ionization. 56th American
Society for Mass Spectrometry Conference (ASMS), Denver, CO, June 1-5, 2008.
Society for Mass Spectrometry Conference (ASMS), Denver, CO, June 1-5, 2008.
Body:
MS Analysis of the TNF-α signaling complex following a novel isolation approach combining biotin and cross-linking methodologies. 54th ASMS Conference on Mass Spectrometry, Seattle, Washington, May 28-June 1, 2006.
Body:Proteomic analysis of shear stress protection mechanisms in endothelial cells. Experimental Biology (FASEB), San Francisco, CA, USA, April 1-5, 2006.
Body:Isolation and Relative Quantification of Phosphatidylserine from Vascular Endothelial Cells. 55th American Society for Mass Spectrometry Conference (ASMS), Indianapolis, Indiana, USA, June 3-7, 2007.
Body:Identification and quantification of mitochondrial proteins from SS and SSBN13 rat heart using mass spectrometry and 18O labeling. 54th ASMS Conference on Mass Spectrometry, Seattle, Washington, May 28-June 1, 2006.
Body:Microfluidic Two-Dimensional Separations, 21st International Forum Process Analytical Technology - IFPAC, Baltimore, MD, Jan 28-31, 2007.
Body:Towards a levitated droplet ion source for electrospray ionization mass spectrometry. 54th ASMS Conference on Mass Spectrometry, Seattle, Washington, May 28-June 1, 2006.
Body:Controlling Charge on Trapped Drops. 55th American Society for Mass Sepctrometry Conference (ASMS), Indianapolis, Indiana, USA, June 3-7, 2007.
Body:Identification of cell surface markers to differentiate endothelial and fibroblast cells using lectin arrays and LC/ESI/MS-MS. 55th American Society for Mass Sepctrometry Conference (ASMS), Indianapolis, Indiana, USA, June 3-3,2007.
Body:Microfluidic Devices for Single Cell Proteome Analysis, 21st International Symposium on MicroScale Bioseperations, Vancouver, BC, Jan 14-18, 2007 (Keynote).
Title:Mirza SP, Pellitteri M, Keyes E, Warren M, Didier D, Hayter J, Halligan BD, Greene AS, Olivier M.
Date:2006-05-28
Body:
Global quantitative comparison of the cellular proteomes of endithelial cells from consomic rat strains under normoxia and hypoxia. 54th ASMS Conference on Mass Spectrometry, Seattle, Washington, May 28-June 1, 2006.
Title:Mirza SP, Pellitteri Mc, Keyes E, Warren M, Didier D, Littrell J, Halligan BD, Twigger S, Greene AS, Olivier M.
Date:2007-06-03
Body:Quantitative analysis of secreted angiogenic proteins during hypoxia. 55th American Society for Mass Spectrometry Conference (ASMS), Indianapolis, Indiana, USA, June 3-7, 2007.
Body:High-throughput characterization of proteins bound to peptoid arrays using mass spectrometry. 55th American Society for Mass Spectrometry Conference (ASMS), Indianapolis, Indiana, USA, June 3-7, 2007.
Body:Microfabricated Fluidic devices for biological separations and analysis. 30th International Symposium on High Performance Liquid Phase Separations and Related Techniques, San Francisco, CA, June 17-22, 2006 (Plenary).
Title:Scalf M, Gray-Keller M, Jarecki JL, Tebon-Oler A, Rabaglia ME, Sabat G, Shortreed MR, Frey BL, Westphall MS, Attie AD, Smith LM.
Date:2006-05-29
Body:Proteomic comparison of mouse pancreatic islet cells using 2-D PAGE and MALDI TOF/TOF to idenify proteins associated with type 2 diabetes. 54th ASMS Conference on Mass Spectrometry, Seattle, Washington, May 28-June 1, 2006.
Body:Delving deeper into proteomes to generate quantitative data. 55th American Society for Mass Spectrometry Conference (ASMS), Indianapolis, Indiana, USA, June 3-7, 2007.
Body:Integrated micromixer and culture chamber for endothelial cell bioreactor development, NCTERM 2006 Annual Meeting, RTP, North Carolina, August 25, 2006.
Body:High speed Faraday cup detector for time of flight mass spectrometry. 54th ASMS Conference on Mass Spectrometry, Seattle, Washington, May 28-June 1, 2006.
Body:Extended Mass Range Ion Defector for Time-of-Flight Mass Analysis. 55th American Society for Mass Spectrometry Conference (ASMS), Indianapolis, Indiana, USA, June 3-7, 2007.
Body:Intact Membrane Protein Purification and Analysis Using Supercritical Fluid Chromatography and Mass Spectometry. 55th American Society for Mass Spectometry Conference (ASMS), Indianapolis, Indiana, USA, June 3-7, 2007.
Body:Analysis of Liver Mitochondria Protein Thiol Modifications in Response to Chronic Alcohol and S-Adenosylmethionine (SAM) Administration. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Interprotein Disulfide Bond Formation Activates PKG1α Independently of cGMP. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Detection and Identification of S-Glutathiolated Proteins in Endothelial Cells Exposed To Oxidants. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Deamidation and Isoaspartic Acid Formation in Proteins. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Protein Characterization in 3-Dimensions via 2-D HPLC and Mass Spectrometry. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Protein separation and characterization by np-RP-HPLC followed by intact MALDI-TOF mass spectrometry and peptide mass mapping analyses. 3rd Symposium on Protein Fractionation and Biomarker Discovery, Salk Institute, CA, October 26-27, 2006.
Title:Dauly C, Odhiambo A, Perlman DH, Huang H, Steinberg MH, Farber HW, Klings ES, O’Connor PB, Costello CE, McComb ME.
Date:2007-10-26
Body:Characterization of Redox Stress Induced Protein Post Translational Modifications of Patients With Sickle Cell Disease-Related Pulmonary Hypertension Using 2-Dimensional Protein Chromatography and Mass Spectrometry. 3rd Symposium on Protein Fractionation and Biomarker Discovery, Salk Institute, CA, October 26-27.
Body:Protein Characterization in 3-Dimensions via 2-D HPLC and Mass Spectrometry. HUPO 5th Annual World Congress, Long Beach, CA, Oct. 28-Nov. 1, 2006.
Body:Epitope Identification of 3-Nitro-Tyrosine Peptides By Monoclonal 3-Nitro-Tyrosine Antibodies Using Proteolytic Epitope-Excision Mass Spectrometry Method. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Inactivation of Creatine Kinase by 4-Hydroxy-2-Nonenal and Identification of 4HNE-Modified Residues by FTICR MS. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Proteome Changes of Rat Aorta Associated With Aging. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Effect of Oxidation on the Structure and Stability of High-Density Lipoprotein. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Title:Greco TM, Hodara R, Parastatidis I, Heijnen HFG, Dennehy MK, Liebler DC, Ischiropoulos H.
Date:2006-10-03
Body:Site-Specific Mapping of the S-Nitrosocysteine Proteome in Human Vascular Smooth Muscle Cells. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Glutathione Peroxidase-1 (GPx-1) Overexpression Alters Receptor-mediated Signaling by Regulating Intracellular Levels of Reactive Oxygen Species. American Heart Association Scientific Sessions national meeting, Chicago, November 2006.
Body:Identification of Novel Phosphorylation Sites Within the Carboxyl-Terminus of Connexin 43 Immunoprecipitated from Canine Heart. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Oxidative Protein Modification by Lipid-Derived Aldehydes, such as 4-Hydroxy-Trans-2-Nonenal (HNE), Promote ER Stress Responses. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:A Proteomic Approach for the Study of Age Dependent Protein Nitration in Heart. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:A Proteomic Analysis of Human Liver Mitochondria During NASH. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Protein Tyrosine Nitration/Denitration - An Oxygen Regulated Process. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:OxICAT: A Global Tool to Monitor Oxidative Thiol Modifications in Proteins. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Dynamics of Site-Specific Calmodulin Nitration and Oxidation Determined Using LC-FTICR MS. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Title:Matsui R, Bachschmid M, Clavreul N, Xu S, Maitland-Toolan K, Pimental D, Ho Yo-S, Cohen RA.
Date:2006-10-03
Body:Decreased Oxidative Stress in Angiotensin II-Infused Glutaredoxin-1 Knockout Mouse. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Title:McComb ME, Hayete B, Huang H, Perlman DH, Luo H, Skelton TP, Steinberg MH, Chui DHK, Collins JJ, Costello CE.
Date:2006-10-03
Body:Pattern-Based Identification of Protein Structural Variations by Mass Spectrometry. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Title:McComb ME, Perlman DH, Dauly C, Huang H, Sethuraman M, Jiang Y, Théberge R, Xie B, Zhou C, O’Connor PB, Cohen RA, Costello CE.
Date:2006-10-26
Body:Clinical Applications of Mass Spectrometry for the Characterization and Quantitation of Protein Post-Translational Modifications. 3rd Symposium on Protein Fractionation and Biomarker Discovery, Salk Institute, CA, October 26-27.
Title:McComb ME, Dauly C, Ohiambo A, Perlman DH, Huang H, Steinberg MH, Farber HW, Klings ES, Costello CE.
Date:2006-10-28
Body:Comparative Proteomics: Post-Translational Modifications in Sickle Cell Disease. HUPO 5th Annual World Congress, Long Beach, CA, Oct. 28-Nov. 1, 2006.
Title:O'Connor PB, McComb ME, Budnik BA, Cipollo JF, Dauly C, Huang H, Ivleva VB, Jebanathirajah JA, Kaur P, Lin C, Perlman DH, Sethuraman M, Zhao C, Zaia J, Cohen RA, Costello CE.
Date:2006-03-12
Body:Development of Mass Spectral Approaches for Investigations of Protein Post-translational Modifications. 2nd Annual US HUPO Conference, Boston, MA March 12-15, 2006.
Body:On the Role of Free Radical Rearrangements in Peptide Dissociation. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Title:Odhiambo A, Perlman DH, McComb ME, Huang H, Costello CE, Farber HW, Steinberg MH, Klings ES.
Date:2006-10-03
Body:Identification of Oxidative Post-Translational Modifications of Plasma Albumin in Pulmonary Hypertension of Sickle Cell Anemia. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Identification of Carboxylases As Potential Targets for Post-Translational Modification By Cyclopentenone Electrophilic Lipids in Endothelial Cells. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Title:Parastatidis I, Thomson L, Fries D, Moore R, Tohyama J, Hazen SL, Heijnen HFG, Dennehy MK, Liebler DC, Rader Dl, IH.
Date:2006-10-03
Body:Proteomic Profiling of Nitrated Proteins in Atherosclerotic Lesions and Plasma Reveals An Anti-Oxidative Role of Apolipoprotein A-I. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Simple, Rapid Coupling of Protein HPLC to MALDI-TOF MS Using an On-Target Ninety-Six-Well Elastomeric Device. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Title:Perlman DH, Bauer S, Bryan NS, Garcia-Saura MF, Fernandez BO, McComb ME, Costello CE, Feelisch M.
Date:2006-10-03
Body:Proteomic and Metabonomic Analyses of the Cardioprotective Effects of Nitrite Administration in the Heart. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Title:Perlman DH, Bauer S, Huang H, Garcia-Saura MF, Bryan NS, Fernandez BO, McComb ME, Feelisch M, Costello CE.
Date:2006-10-28
Body:Profiles of Cardioprotection: Integrated Proteomic and Metabonomic Study of the Effects of Nitrite Treatment on the Heart. HUPO 5th Annual World Congress, Long Beach, CA, Oct. 28-Nov. 1, 2006
Title:Perlman DH, Bauer S, Huang H, Garcia-Saura MF, Bryan NS, Fernandez BO, McComb ME, Feelisch M, Costello CE.
Date:2006-10-28
Body:Profiles of Cardioprotection: Integrated Proteomic and Metabonomic Study of the Effects of Nitrite Treatment on the Heart. HUPO 5th Annual World Congress, Long Beach, CA, Oct. 28-Nov. 1, 2006.
Body:Identification and Characterisation of Tyrosine Nitration in Human Eosinophils Using FTICR Mass Spectrometry in Combination with Immunoanalytical Procedure. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Cardiac-specific overexpression of catalase prevents progressive left ventricular remodeling and failure in gaq-overexpression transgenic mice. American Heart Association Scientific Sessions national meeting, Chicago, November 2006.
Body:Immune vs. Thrombotic Stimulation of Platelets Differentially Regulates Intracellular Protein Associations and Protein Release: A Proteomics Analysis. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Immune vs. Thrombotic Stimulation of Platelets Differentially Regulates Intracellular Protein Associations and Protein Release: A Proteomics Analysis. American Heart Association Scientific Sessions national meeting, Chicago, November 2006.
Body:Identification and Quantification of Oxidative Post-Translational Modifications of Cysteine Thiols of P21ras That Are Responsible for Redox Modulation of Its Activity. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Detection of Modifications of Human Bile Acid COA:Amino Acid N-Acyltransferase By 4HNE Using LTQ-FTMS Analysis. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Proteomic Analysis of Smooth Muscle Cell Differentiation in a P19 Model System: Preliminary Results. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:A Software Shell for MS Data Conversion and Database Submission of MS Data. 2nd Annual US HUPO Conference, Boston, MA March 12-15, 2006.
Body:BUDSS: A Software Shell for MS Data Processing and Management. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:BUDSS: A Software Shell for MS Data Processing and Management. HUPO 5th Annual World Congress, Long Beach, CA, Oct. 28-Nov. 1, 2006.
Body:Novel Fluorescent Tag for Labeling Oxidative Post-Translational Modifications of Tyrosine Residues in Aging Tissue. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:BUPID: A Novel Protein Identification Tool by Searching Sequence Databases Using Peptide Mass Fingerprint Data. 2nd Annual US HUPO Conference, Boston, MA March 12-15, 2006.
Body:High Glucose Prevents Inhibition of Smooth Muscle Cell Migration By Nitric Oxide: Role of SERCA Cysteine-674. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Title:Trostchansky A, Souza JM, Ferreira A, Ferrari M, Blanco F, Baker PR, O´Donnell VB, Rubbo H.
Date:2006-10-03
Body:Chemical and Biological Characterization of Nitroarachidonate: Isomer Distribution and Modulation of Inflammation. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Chronic Hypoxia Increases Carbonylated Proteins in Rat Pulmonary Artery. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Detection of Sulfonic Oxidation of SERCA Cysteine-674 By Immunohistochemistry. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:SERCA Cys-674 Is Required for the Inhibition by Nitric Oxide of Cell Migration. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:A Detailed Map of Oxidative Post-Translational Modifications of Human P21ras Using Fourier Transform Mass Spectrometry. “Oxidative Post-Translational Modifications of Proteins in Cardiovascular Disease” symposium, Boston University School of Medicine, October 2006.
Body:Biomedicine in the Post-genomic Era Conference, the National Institute of Respiratory Disease, “Genomics and Proteomics Approaches to Respiratory Syncytial Virus Infection”, Mexico, City, December, 2005.
Body:“Dynamic Interplay Between GlcNAc and Phosphate on Regulatory Proteins” 8th International Symposium on Mass Spectrometry in Health & Life Sciences: Molecular & Cellular Proteomics; San Francisco, August 19-23, 2007.
Body:“O-GlcNAc Cycling: Roles in Insulin Resistance and Glucose Toxicity” Invited Speaker, FASEB Conference, Snow Mass Colorado, August 4-9, 2007, Glucose Transporter Biology.
Body:“O-GlcNAcomics”: Novel Approaches to Study the Crosstalk Between GlcNAcylation and Phosphorylation on Regulatory Proteins - Application to Biomarker Discovery. State-of-the-Art Lecture HUPO 6th Annual World Congress, Seoul Korea, October 6-10, 2007.
Title:Hill S, Comte-Walters J, Schwacke J, Slate E, Knapp R, Krug E, Knapp DR, Schey K.
Date:2007-03-04
Body:iTRAQ Analysis using Analysis of Variance. US Human Proteome Organization, Seattle, WA, March 4-7, 2007.
Body:A Poster Presentation, 16 Annual Keck’s Research Conference, Houston, TX, October 13, 2006.
Body:Microfluidic Platform for ESI (DESI) and MALDI (LDI) Shotgun Proteomic Analysis. US Proteome Organization, Seattle WA, March 4-7, 2007.
Body:Signal extraction for numerical decoupling of S-systems. International Conference on Molecular Systems Biology (ICMSB’04), Tahoe, CA, August 21-25, 2004.
Body:
Fine-tuning ER-beta structure with PTMs. Chem Biol 13: 923-924, 2006.
Body:Regulation of angiogenesis by hypoxia-inducible factor 1.
Crit Rev Oncol Hematol. 59(1):15-26, 2006.
Crit Rev Oncol Hematol. 59(1):15-26, 2006.
Title:Irani DN, Anderson C, Gundry R, Cotter R, Moore S, Kerr DA, McArthur JC, Sacktor N, Pardo CA, Jones M, Calabresi PA, Nath A.
Date:2006-01-25
Body:Cleavage of cystatin C in the cerebrospinal fluid of patients with multiple sclerosis. Ann Neurol 59: 237-247, 2006.
Body:Optimization of paper bridge loading for 2-DE analysis in the basic pH region: Application to the mitochondrial subproteome. Proteomics, 6: 5683-5687, 2006.
Body:Cancer's molecular sweet tooth and the Warburg effect. Cancer Res 66: 8927-8930, 2006.
Body:
Proteomics in cardiovascular surgery. J Thorac Cardiovasc Surg. 133(1):210-4, 2007.
Body:
Expanding the subproteome of the inner mitochondrial membrane, site of oxidative phosphorylation and majority of mutational-causing mitochondrial diseases: protein separation by 2-dimensional liquid chromatography and gel electrophoresis. Mol Cell Proteomics. 5(12):2392-411, 2006.
Title:Mishra GR, Suresh M, Kumaran K, Kannabiran N, Suresh S, Bala P, Shivakumar K, Anuradha N, Reddy R, Raghavan TM, Menon S, Hanumanthu G, Gupta M, Upendran S, Gupta S, Mahesh M, Jacob B, Mathew P, Chatterjee P, Arun KS, Sharma S, Chandrika KN, Deshpande N, Palvankar K, Raghavnath R, Krishnakanth R, Karathia H, Rekha B, Nayak R, Vishnupriya G, Kumar HG, Nagini M, Kumar GS, Jose R, Deepthi P, Mohan SS, Gandhi TK, Harsha HC, Deshpande KS, Sarker M, Prasad TS, Pandey A.
Date:2006-01-01
Body:
Human protein reference database--2006 update. Nucleic Acids Res 34: D411-414, 2006.
Title:Narolska NA, Piroddi N, Belus A, Boontje NM, Scellini B, Deppermann S, Zaremba R, Musters RJ, Dos Remedios C, Jaquet K, Foster DB, Murphy AM, van Eyk JE, Tesi C, Poggesi C, van der Velden J, Stienen GJ.
Date:2006-10-27
Body:Impaired Diastolic Function After Exchange of Endogenous Troponin I with C-Terminal Truncated Troponin I in Human Cardiac Muscle. Circ Res, 99: 1012-20, 2006.
Body:
A solubility optimization protocol for 2-D gel electrophoresis of cardiac tissue. Methods in Molecular Biology Series: Cardiovascular Proteomics (ed. F. Vivanco) The Humana Press Inc. Totowa, NJ Methods Mol Biol. 357:59-65, 2007.
Title:Suresh S, Sujatha Mohan S, Mishra G, Hanumanthu GR, Suresh M, Reddy R, Pandey A.
Date:2005-12-30
Body:Proteomic resources: integrating biomedical information in humans. Gene 364: 13-18, 2005.
Body:MASCOT HTML and XML parser: An implementation of a novel object model for protein identification data. Proteomics 6: 5688-5693, 2006.
Body:Cell signaling, the essential role of O-GlcNAc! Biochim Biophys Acta 1761: 599-617, 2006.
Body:How to Evaluate the Quality of Predictive Models for Classification. Kidney Int 70: 232-232, 2006.
Body:Response to urinary protein markers in lupus nephritis: The need for concurrent calibration and discrimination statistics in predictive models. Kidney Int. 70(1): 231-2, 2006.
Body:Comparison of variability associated with sample preparation in two-dimensional gel electrophoresis of cardiac tissue. J Biomol Tech 17(3) 195-9, 2006.
Body:A multivariate hybridization prediction model for DNA microarrays. BMC Bioinformatics 7: 101, 2006.
Body:Parameter Estimation in Biochemical Systems Models with Alternating Regression. BMC Theoretical Biology and Medical Modelling(3):25, 2006.
Body:Controllability of nonlinear biochemical systems. Math Biosc 196: 99-123, 2005.
Title:Lindsey ML, Goshorn DK, Comte-Walters S, Hendrick JW, Hapke E, Zile MR, Schey K.
Date:2006-02-22
Body:A multidimensional proteomics approach to identify hypertrophy-associated proteins. Proteomics 6(7): 2225-53, 2006.
Body:An automated procedure for the extraction of metabolic network information from time series data. J Bioinform Comp Biol 4: 665-691, 2006.
Body:Identification of metabolic system parameters using global optimization methods. BMC Theor Biol Med Model. 3(1): 4, 2006.
Body:Signaling pathways in the host cell responses to RSV infection. RNA Viruses: Host Gene Responses to Infection. Edited by Decheng Yang, World Scientific Publishing, pg. 157-184, Section II Chapter 7, 2009.
Body:
Diverse regulation of protein function by O-GlcNAc: a nuclear and cytoplasmic carbohydrate post-translational modification. Curr Opin Chem Biol, 6: 851-7, 2002.
Body:Cytoprotective role of Ca2+- activated K+ channels in the cardiac inner mitochondrial membrane. Science, 298: 1029-33, 2002.
Body:
Nucleocytoplasmic Glycosylation, O-linked b-N-Acetylglucosamine. Current Organic Chemistry, 8, 369-383, 2004.
Body:Development of Sindbis viruses encoding nsP2/GFP chimeric proteins and their application for studying nsP2 functioning. J Virol: 5046-47, 2007.
Body:Subpollen particles: carriers of allergenic proteins and oxidases. J Allergy Clin Immunol, 118(4):844-50, 2006.
Body:Lactoferrin decreases pollen antigen-induced allergic airway inflammation in a murine model of asthma. Immunology 119: 159-66, 2006.
Title:Bennett BL, Garofalo RP, Cron SG, Hosakote YM, Atmar RL, Macias CG, Piedra PA.
Date:2007-05-15
Body:Immunopathogenesis of respiratory syncytial virus bronchiolitis. J Infec Dis 207: 195, 2007.
Title:Bowick GC, Fennewald SM, Scott EP, Zhang L, Elsom BL, Aronson JF, Spratt HM, Luxon BA, Gorenstein DG, Herzog NK.
Date:2007-02-01
Body:
Identification of differentially activated cell signaling networks associated with hemorrhagic fever virus pathogenesis using systems kinomics. J Virol 81(4): 1592-1600, 2007.
Title:Bowick GC, Fennewald SM, Elsom BL, Aronson JF, Luxon BA, Gorenstein DG, Herzog NK.
Date:2006-10-20
Body:Differential signaling networks induced by mild and lethal hemorrhagic fever virus infections. J Virol 80: 10248-52, 2006.
Body:Natural and Engineered Nucleic Acids as Tools to Explore Biology. Nature 432: 838-845, 2004.
Body:
Probabilistic enrichment of phosphopeptides by their mass defect. Anal Chem 78: 4374-82, 2006.
Body:Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins. Bioinformatics 22, 2735-8, 2006.
Title:Castro SM, Guerrero-Plata A, Suarez-Real G, Adegboyega PA, Colasurdo GN, Khan AM, Garofalo RP, Casola A.
Date:2006-12-16
Body:
Antioxidant Treatment Ameliorates Respiratory Syncytial Virus-Induced Disease and Lung Inflamattion. Am J Res & Critical Care Med 174: 1361-69, 2006.
Body:Single-cell analysis of siRNA-mediated gene silencing using multiparameter flow cytometry. Cytometry 69A(2): 59-65, 2006.
Body:Proteomic analysis of colonic myofibroblasts and effect on colon cancer cell proliferation. Surgery 138(2): 382-390, 2005.
Body:Isotope-coded affinity tags for protein quantification.
New and Emerging Proteomic Techniques Methods Mol Biol 328:151-8, 2006.
Body:A new direction in understanding the pathogenesis of respiratory syncytial virus bronchiolitis: how real infants suffer. J Infect Dis 207: 1084-86, 2007.
Body:Challenges and opportunities in proteomics data analysis. Mol Cell Proteomics 5: 1921-6, 2006.
Title:Fennewald SM, Scott EP, Zhang L, Yang X, Aronson JF, Gorenstein DG, Luxon BA, Shope RE, Beasley DW, Barrett AD, Herzog NK.
Date:2007-03-01
Body:Thioaptamer decoy targeting of AP-1 proteins influence cytokine expression and the outcome of arenavirus infections. J General Virology 88: 981-990, 2007.
Body:
Oligomeric states of proteins determined by size-exclusion chromatography coupled with light scattering, absorbance, and refractive index detectors. Methods in Molecular Biology: New and Emerging Proteomics Techniques 328(6): 97-112, 2006.
Title:Geng T, Seitz PK, Thomas ML, Xu B, Soman KV, Kurosky A, Luxon BA, Cunningham KA.
Date:2006-11-15
Body:Use of surface enhanced laser desorption/ionization-time of flight mass spectrometry (SELDI-TOF MS) to study protein expression in a rat model of cocaine withdrawal. J Neurosci Methods 158: 1-12, 2006.
Title:Gillette WK, Esposito D, Frank PH, Zhou M, Yu LR, Jozwik C, Zhang X, McGowan B, Jacobowitz DM, Pollard HB, Hao T, Hill DE, Vidal M, Conrads TP, Veenstra TD, Hartley JL.
Date:2005-11-01
Body:Pooled ORF expression technology (POET): using proteomics to screen pools of open reading frames for protein expression. Mol Cell Proteomics 4: 1647-52, 2005.
Body:Granzyme B is dispensable for immunological tolerance to self in a murine model of systemic lupus erythematosus. Arth Rheum 52:1684-1693, 2005.
Body:Quantitiative proteomic analysis of B cell lipid rafts reveals that ezrin regulates antigen receptorA-mediated lipid raft dynamics. Nat Immunol 7: 625-33, 2006.
Body:An alternative splice produce of IκB kinase (IKK)-γ, IKKγ-Δ, differentially mediates cytokine and HTLV-I tax induced NF-κB activation. J Virol 80: 4227-4241, 2006.
Body:How the Number of Alleles Influences Gene Expression. J Statistical Physics (128), 2007.
Body:
Proteomic biomarkers for autoimmune disease. Proteomics 6(14): 4100-5, 2006.
Body:Granzyme B and natural killer (NK) death. Mod Rheumatol 15: 315-322, 2005.
Body:A curated compendium of phosphorylation motifs. Nat Biotechnol 25(3):285-6, 2007.
Body:Discovering robust protein biomarkers for disease from relative expression reversals in 2-D DIGE data. Proteomics 7:1197-1207, 2007.
Title:Dai T, Tian Y, Tocchetti CG, Katori T, Murphy AM, Kass DA, Paolocci N, Gao WD.
Date:2007-05-01
Body:Nitroxyl (HNO) increases force development in rat cardiac muscle. J Physiol 580: 951-60, 2007.
Body:Local control in thin filament activation of cardiac muscle. J Physiol 580: 358, 2007.
Title:Guo Y, Singleton PA, Rowshan A, Gucek M, Cole RN, Graham DR, Van Eyk JE, Garcia JG.
Date:2007-08-06
Body:Quantitative proteomic analysis of human endothelial cell membrane rafts: Evidence of MARCKS and MRP regulation in the sphingosine 1-phosphate-induced barrier enhancement. Mol Cell Proteomics 6: 689-696, 2007.
Body:Cycling of O-linked b-N-acetylglucosamine on nucleocytoplasmic proteins. Nature 446, 1017-1022, 2007.
Body:A novel two-color Fab labeling method for autoantigen protein microarrays. Nature Methods 9: 745-751, 2006.
Body:Examination of the structural and functional versatility of glmS ribozymes by using in vitro selection. Nucleic Acids Res. 34: 4968-4975, 2006.
Body:Multi-protein complexes at the ß-globin locus. Brief Funct Genomic Proteomic 5(1): 62-65, 2006.
Title:Malmstrom J, Lee H, Nesvizhskii A, Shteynberg D, Mohanty S, Brunner E, Ye M, Weber G, Eckerskorn C, Aebersold R.
Date:2006-09-09
Body:Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis. J Proteomics Res 5(9): 2241-2249, 2006.
Body:
Effects of thin-film structural parameters on laser desorption/ionization from porous alumina. Anal Chem. 79 (13): 4950-6, 2007.
Title:Paniagua RT, Sharpe O, Ho PP, Chan SM, Chang A, Higgins JP, Tomooka BH, Thomas FM, Song JJ, Goodman SB, Lee DM, Genovese MC, Utz PJ, Steinman L, Robinson WH.
Date:2006-10-01
Body:Selective tyrosine kinase inhibition by imatinib mesylate for the treatment of rheumatoid arthritis. J Clin Invest 116: 2633-2642, 2006.
Body:Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software. Nature Methods 3(7): 533-39, 2006.
Body:
Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes. Nature Biotechnol 23: 1424-1433, 2005.
Title:Pollard HB, Eidelman O, Jozwik C, Huang W, Srivastava M, Ji XD, McGowan B, Norris CF, Todo T, Darling T, Mogayzel PJ, Zeitlin PL, Wright J, Guggino WB, Metcalf E, Driscoll WJ, Mueller G, Paweletz C, Jacobowitz DM.
Date:2006-09-05
Body:De novo biosynthetic profiling of high abundance proteins in cystic fibrosis lung epithelial cells. Mol Cell Proteomics 5: 1628-37, 2006.
Body:High abundance protein profiling of cystic fibrosis lung epithelial cells. Proteomics 5: 2210-26, 2005.
Body:Monolithic media in microfluidic devices for proteomic analysis. Electrophoresis 27: 3547-3558, 2006.
Title:Schnapp LM, Donohoe S, Chen J, Sunde DA, Kelly PM, Ruzinski J, Martin T, Goodlett DR.
Date:2006-07-01
Body:Mining the acute respiratory distress syndrome proteome: Identification of the insulin-like growth factor (IGF)/IGF-binding protein-3 pathway in acute lung injury. Am J Pathology 169: 86-95, 2006.
Body:Protein crosslinking analysis using mass spectrometry, isotope-coded crosslinkers and computational data processing. J Proteome Res 5: 2270-2282, 2006.
Title:Brunner E, Ahrens CH, Mohanty S, Baetschmann H, Loevenich S, Potthast F, Deutsch EW, Panse C, de Lichtenberg U, Rinner O, Lee H, Pedrioli PG, Malmstrom J, Koehler K, Schrimpf S, Krijgsveld J, Kregenow F, Heck AJ, Hafen E, Schlapbach R, Aebersold R.
Date:2007-05-25
Body:A high-quality catalog of the Drosophila melanogaster proteome. Nat Biotechnol 25(5):576-83, 2007.
Body:Development and validation of a spectral library searching method for peptide identification from MS/MS. Proteomics7(5):655-67, 2007.
Body:Using stable isotope tagging and mass spectrometry to characterize protein complexes and to detect changes in their composition. Methods Mol Biol 359:17-35, 2007.
Body:
An integrated mass spectrometric and computational framework for the analysis of protein interaction networks. Nat Biotechnol 25(3):345-52, 2007.
Body:Simulation and parametric study of a novel multi-spray emitter for ESI-MS applications. J Microfluidics and Nanofluidics 3: 283-98, 2006.
Body:Modeling and characterization of a carbon fiber emitter for electrospray ionization. J Micromech Microeng (16): 620-630, 2006.
Body:
Multistep mass tagging coupled with 2D LC-MS--an approach to increasing the number of identified proteins. J Biomol Tech 16: 190-196, 2005.
Body:Quantitative proteome analysis using isotope-coded affinity tags and mass spectrometry. Nat Protocols 1: 139-145, 2006.
Body:Pharmacoproteomics of 4-Phenylbutyrate-treated IB3-1 cystic fibrosis bronchial epithelial cells. J. Proteome Res. 5: 562-71, 2006.
Title:Srivastava M, Eidelman O, Jozwik C, Paweletz C, Huang W, Zeitlin PL, Pollard HB.
Date:2006-04-01
Body:Serum proteomic signature for cystic fibrosis using an antibody microarray platform. Mol Genet Metab. 87: 303-10, 2006.
Title:Almeida JS, Chen C, Gorlitsky R, Stanislaus R, Aires-de-Sousa M, Eleutério P, Carriço J, Maretzek A, Bohn A, Chang A, Zhang F, Mitra R, Mills GB, Wang X, Deus HF.
Date:2006-09-01
Body:
Data integration gets 'Sloppy'. Nature Biotechnology, 24: 1070-1071, 2006.
Title:Starkey JM, Haidacher SJ, LeJeune WS, Zhang X, Tieu BC, Choudhary S, Brasier AR, Denner LA, Tilton RG.
Date:2006-05-01
Body:Diabetes-induced activation of canonical and non-canonical nuclear factor-κB pathways in renal cortex. Diabetes, 55:1252-1259, 2006.
Body:
Enzymatic digestion of proteins in gels for mass spectrometric identification and structural analysis. In: Current Protocols in Protein Science (J.E. Coligan, B.M. Dunn, H.L. Ploegh, D.W. Speicher, and P.T. Wingfield, eds.) pp. 11.3.1-11.3.XX. John Wiley & Sons, New York.
Body:A tail strength measure for assessing overall significance in a dataset. Biostatistics 7(2): 167-181, 2005.
Body:The ‘miss rate’ for the analysis of gene expression data . Biostatistics 6(1): 111-117, 2004.
Body:Combinatorial selection and delivery of thioaptamers. Biochem Soc Trans 35: 50-52, 2007.
Body:
Solid-phase extraction of N-linked glycopeptides. Nat Protoc 2(2):334-9, 2007.
Body:Outlier sums for differential gene expression analysis. Biostatistics 8(1):2-8, 2007.
Title:Torosyan Y, Dobi A, Naga S, Mezhevaya K, Glasman M, Norris C, Jiang G, Mueller G, Pollard H, Srivastava M.
Date:2006-10-01
Body:
Distinct effects of annexin A7 and p53 on arachidonate lipoxygenation in prostate cancer cells involve 5-lipoxygenase transcription. Cancer Res 66: 9609-16, 2006.
Title:Varghese SA, Powell TB, Budisavljevic MN, Oates JC, Raymond JR, Almeida JS, Arthur JM.
Date:2007-03-18
Body:Urine biomarkers predict the cause of glomerular diseases. J Am Soc Nephrol 18: 913-22, 2007.
Body:Selective inhibition of endoplasmic reticulum-associated degradation rescues DeltaF508-cystic fibrosis transmembrane regulator and suppresses interleukin-8 levels: therapeutic implications. J Biol Chem 281: 17369-78, 2006.
Body:Regulation of Glycolysis in Lactococcus lactis: An Unfinished Systems Biological Case Study. IEE Systems Biology 153: 286-298, 2006.
Title:Volk DE, Lee YC, Li X, Thiviyanathan V, Gromowski GD, Li L, Lamb AR, Beasley DW, Barrett AD, Gorenstein DG.
Date:2007-07-20
Body:Solution structure of the envelope protein domain III of dengue-4 virus. Virol(364): 147-154, 2007.
Body:Ab initio base-pairing engergies of an oxidized thymine product, 5 formyluracil, with standard DNA bases at the BSSE-free DFT and MP2 theory levels. Org Biomol Chem (5): 15554-58, 2007.
Body:Identification of proteins bound to thioaptamer probe on a proteomics array. Biochem Biophys Res Commun 347(3): 586-593, 2006.
Body:Fluid supported lipid bilayers containing monosialoganglioside GM1: A QCM-D and FRAP study. Colloids Surf B Biointerfaces 50(1): 76-84, 2006.
Title:Whiteaker JR, Zhang H, Eng JK, Fang R, Piening BD, Feng LC, Lorentzen TD, Schoenherr RM, Keane JF, Holzman T, Fitzgibbon M, Lin C, Zhang H, Cooke K, Liu T, Camp DG 2nd, Anderson L, Watts J, Smith RD, McIntosh MW, Paulovich AG.
Date:2007-02-01
Body:
Head-to-head comparison of serum fractionation techniques. J Proteome Res 6(2):828-36, 2007.
Title:Wu B, Abbott T, Fishman D, McMurray W, Mor G, Stone K, Ward D, Williams K, Zhao H.
Date:2006-02-01
Body:Ovarian cancer classification based on mass spectrometry analysis of sera. Cancer Informatics, 2: 123-132, 2006.
Body:
Two-Dimensional Difference Gel Electrophoresis in Methods in Molecular Biology: New and Emerging Proteomics Techniques (Nedelkov, D., and Nelson, R. eds) Humana Press, 328(5): 71-96, 2006.
Title:Yang Q, Huang W, Jozwik C, Lin Y, Glasman M, Caohuy H, Srivastava M, Esposito D, Gillette W, Hartley J, Pollard HB.
Date:2005-07-05
Body:Cardiac glycosides inhibit TNF-alpha/NF-kappaB signaling by blocking recruitment of TNF receptor-associated death domain to the TNF receptor. Proc Natl Acad Sci USA 102: 9631-9636, 2005.
Title:Yang X, Li X, Prow TW, Reece LM, Bassett SE, Luxon BA, Herzog NK, Aronson, Shope RE, Leary JF,Gorenstein DG.
Date:2003-05-15
Body:Immunofluorescnece assay and flow-cytometry selection of bead-bound aptamers. Nucleic Acids Res 31(10): e54, 2003.
Body:Two types of precursor cells in a multipotential hematopoietic cell line. PNAS. 102: 18461-18466, 2005.
Body:Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space Based Approach. IEEE/ACM Trans Comput Biol Bioinform, 3: 208-219, 2006.
Body:Statistical methods in proteomics. Springer Handbook of Engineering Statistics, (Pharm, H. ed) Part D Section 34, 1120, 2006.
Body:MALDI-MS Data Analysis for Disease Biomarker Discovery in Methods in Molecular Biology: New and Emerging Proteomics Techniques (Nedelkov, D., and Nelson, R. eds) Humana Press, Totowa, NJ. Methods Mol Biol 328(14): 199-216, 2006.
Title:Zhang H, Loriaux P, Eng J, Campbell D, Keller A, Moss P, Bonneau R, Zhang N, Zhou Y, Wollscheid B, Cooke K, Yi EC, Lee H, Peskind ER, Zhang J, Smith RD, Aebersold R.
Date:2006-08-10
Body:Unipep, a database for human N-linked glycosites: a resource for biomarker discovery. Genome Biology 7: R73, 2006.
Body:Mass spectrometric detection of tissue proteins in plasma. Mol Cell Proteomics: 6(1):64-71, 2006.
Body:New camptothecin and ellagic acid analogues from the root bark of Camptotheca Acuminata. Planta Med(70): 1216-21, 2004.
Body:The NF-κB regulatory network. Cardiovasc Toxicol, 6(2): 111-130, 2006.
Body:
Biological Systems Modeling and Analysis: A Biomolecular Technique of the 21st Century. J Biomolec Tech 17: 252-269, 2006.
Body:The pharmacophore of a peptoid VEGF Receptor 2 antagonist includes both side chain and main chain residues. Bioorg Med Chem Lett 18: 5992-5894, 2008.
Body:A Peptoid Antagonist of VEGF Receptor 2 Recognizes A "Hotspot" In the Extracellular Domain Distinct From The Hormone-Binding Site. Bioorg & Med Chem 16: 6338-6343, 2008.
Title:Arab S, Gramolini AO, Ping P, Kislinger T, Stanley B, van Eyk J, Ouzounian M, MacLennan DH, Emili A, Liu PP.
Date:2008-01-08
Body:
Cardiovascular proteomics: tools to develop novel biomarkers and potential applications. J Am Coll Cardiol 48(9): 1733-41, 2006.
Title:Chen R, Brentnall TA, Pan S, Cooke K, Moyes KW, Lane Z, Crispin DA, Goodlett DR, Aebersold R, Bronner MP.
Date:2007-05-12
Body:
Quantitative proteomics analysis reveals that proteins differentially expressed in chronic pancreatitis are also frequently involved in pancreatic cancer. Mol Cell Proteomics 6(8): 1331-1342, 2007.
Body:Parameter Estimation in Biochemical Systems Models with Alternating Regression. SORT 31(1): 55-74, 2007.
Body:
O-GlcNAc modification in diabetes and Alzheimer’s disease. Mol Biosystems 3: 766-772, 2007.
Title:Djouder N, Metzler SC, Schmidt A, Wirbelauer C, Gstaiger M, Aebersold R, Hess D, Krek W.
Date:2007-10-12
Body:S6K1-mediated disassembly of mitochondrial URI/PP1 gamma complexes activates a negative feedback program that counters S6K1 survival signaling. Mol Cell 28(1):28-40, 2007.
Title:Donowitz M, Singh S, Salahuddin FF, Hogema BM, Chen Y, Gucek M, Cole RN, Zachos NC, Kovbasnjuk O, Lapierre LA, Broere N, Goldenring J, Dejonge H, Li X.
Date:2007-10-06
Body:Proteome of Murine Jejunal Brush Border Membrane Vesicles. Proteome Res 6: 4068-79, 2007.
Title:Fisher WG, Rosenblatt KP, Fishman DA, Whiteley GR, Mikulskis A, Kuzdzal SA, Lopez MF, Garner HR.
Date:2007-10-05
Body:A Robust Biomarker Discovery Pipeline for High Performance Mass Spectrometry Data. J Bioinform Comput Biol 5: 1023-45, 2007.
Body:Isolation of signal transduction complexes using biotin and crosslinking methodologies. Proteomics 7(14): 2371-4, 2007.
Title:Ganesh SK, Sharma Y, Dayhoff J, Fales HM, Van Eyk JE, Kickler TS, Billings EM, Nabel EG.
Date:2007-06-20
Body:Detection of venous thromboembolism by proteomic serum biomarkers. PLoS ONE 2(6): e544, 2007.
Body:Analysis of protein complexes using mass spectrometry. Nature Rev Mol Cell Biol 8:645-54, 2007.
Body:Unraveling the complexity of circulating forms of brain natriuretic peptide. Clin Chem 53: 1181-2, 2007.
Body:A proteomic primer for the clinician. Proc Am Thorac Soc 4: 9-17, 2007.
Body:Controlling charge on levitating drops. Anal Chem 79 (15): 6027-6030, 2007.
Body:Subfractionation of heart tissue: the “IN Sequence” myofilament protein extraction of myocardial tissue. Methods in Mol Biol 357: 87-90, 2007.
Body:Combinatorial selection of an RNA thioaptamer that binds to Venezuelan Equine Encephalitis virus capsid protein. FEBS Lett 581: 2497-2502, 2007.
Title:Karpievitch YV, Hill EG, Smolka AJ, Morris JS, Coombes KR, Baggerly KA, Almeida JS.
Date:2007-01-15
Body:PrepMS: TOF MS data graphical preprocessing tool. Bioinformatics 23(2): 264-5, 2007.
Body:The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes. PNAS 104(41):16068-73, 2007.
Title:Bjornson RD, Carriero NJ, Colangelo C, Shifman M, Cheung KH, Miller PL, Williams K.
Date:2008-01-07
Body:X!!Tandem, an improved method for running X!tandem in parallel on collections of commodity computers. J Proteome Research 7(1): 293-9, 2008.
Body:
In vitro selection and characterization of cellulose-binding DNA aptamers. Nucleic Acids Res. 35, 6378-6388, 2007.
Body:Increased ICAM-1 expression causes endothelial cell leakiness, cytoskeletal reorganization and junctional alterations. J Invest Dermatol 127: 762-774, 2007.
Body:Quantitating the relative abundance of isoaspartyl residues in deamidated proteins by electron capture dissociation. J Am Soc Mass Spectrom 18: 48-56, 2007.
Body:
Intrinsically cell-permeable miniature proteins based on a minimal cationic PPII motif. J Am Chem Soc 129: 14578-14579, 2007.
Body:
A network biology approach to prostate cancer. Mol Syst Biol 3: 82, 2007.
Body:Vascular calcification: Pathobiological mechanisms and clinical implications. Circ Res 99: 1044-1059, 2006.
Body:Quantitative determination of isotope ratios from experimental isotopic distributions. Anal Chem 79: 1198-1204, 2007.
Body:Growth factor independence-1 (Gfi-1) plays a role in mediating specific granule deficiency (SGD) in a patient lacking a gene-inactivating mutation in the C/EBPepsilon gene. Blood 109(10): 4181-90, 2007.
Body:Hypoxia-inducible factor 1 and dysregulated c-Myc cooperatively induce vascular endothelial growth factor and metabolic switches hexokinase 2 and pyruvate dehydrogenase kinase 1. Mol Cell Biol: 7381-93, 2007.
Body:Relating three-dimensional structures to protein networks provides evolutionary insights. Science 314: 1938-41, 2006.
Body:Field emission from a single nanomechanical pillar. Nanotechnology 18: 1-4, 2007.
Body:Knockdown of NHERF1 enhances degradation of temperature rescued DeltaF508 CFTR from the cell surface of human airway cells. Cell Physiol Biochem 20: 763-72, 2007.
Body:Quantitative comparison of the relative cell permeability of cyclic and linear peptides. Chem & Biol 14: 671-77, 2007.
Body:Quantitative evaluation of the relative cell permeability of peptoids and peptides. J Amer Chem Soc 129: 1508-09, 2007.
Body:Characterization of Vascular Endothelial Growth Factor (VGEF) Receptors on the Endothelial Cell Surface During Hypoxia Using Whole Cell Binding Arrays. Anal Biochem 369: 241-247, 2007.
Body:Oxidative enzymopathies and vascular disease. Arterioscler Thromb Vasc Biol 25, 1332-1340, 2005.
Body:Periodate-triggered cross-linking reveals Sug2/Rpt4 as the
molecular target of a peptoid inhibitor of the 19S proteasome
regulatory particle. J Amer Chem Soc. 129, 12936-12937, 2007.
Body:
Identification of a peptoid inhibitor of the proteasome 19S regulatory particle. J Amer Chem Soc 129: 7750-51, 2007.
Body:Engineering high-speed allosteric hammerhead ribozymes. J Biol Chem 388: 779-786, 2007.
Body:Label transfer chemistry for the characterization of protein-protein interactions. J Amer Chem Soc 129: 12348-49, 2007.
Body:Chemistry of periodate-mediated cross-linking of 3,4-dihydroxyphenlalanine (DOPA)-containing molecules to proteins. J Amer Chem Soc 128: 15228-35, 2006.
Body:RACK1 vs. HSP90: Competition for HIF-1α Degradation vs. Stabilization. Cell Cycle 6: 656-659, 2007.
Body:RACK1 competes with HSP90 for binding to HIF-1α and is required for O2-independent and HSP90 inhibitor-induced degradation of HIF-1α. Mol Cell 25: 207-17, 2007.
Body:Control of Beta Globin Genes. J Cellular Biochemistry 102(4): 801-10, 2007.
Title:Mathivanan S, Periaswamy B, Gandhi T, Kandasamy K, Suresh S, Mohmood R, Ramachandra Y, and Pandey A.
Date:2006-12-18
Body:
An evaluation of human protein-protein interaction data in the public domain. BMC Bioinformatics 7(5): S19, 2006.
Body:
Design and implementation of a high power rf oscillator on a printed circuit board for multipole ion guides. Rev Sci Instrum 77: 114101, 2006.
Title:Matt P, Fu Z, Carrel T, Huso DL, Dirnhofer S, Lefkovits I, Zerkowski HR, Van Eyk JE.
Date:2007-12-01
Body:Proteomic alterations in heat shock protein 27 and identification of phosphoproteins in ascending aortic aneurysm associated with bicuspid and tricuspid aortic valve. J Mol Cell Cardiol 43(6):792-801, 2007.
Body:An improved method for the analysis of membrane proteins by mass spectrometry. Physiological Genomics 30 (1): 89-94, 2007.
Body:Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry. Proteomics 104: 2199-2204, 2007.
Body:Genetic evidence supporting caveolae microdomain regulation of calcium entry in endothelial cells. J Biol Chem 282(22): 16631-43, 2007.
Body:Re-expression of caveolin-1 in endothelium rescues the vascular, cardiac, and pulmonary defects in global caveolin-1 knockout mice. J Exper Med 204(10): 2373-82, 2007.
Body:MALDI Mass Spectrometry Instrumentation in MALDI-MS.
Hillenkamp F, Peter-Katalinic J, Eds, Wiley-VCH Verlag GmbH & Co. KGaA, Germany: 29-82, 2007.
Hillenkamp F, Peter-Katalinic J, Eds, Wiley-VCH Verlag GmbH & Co. KGaA, Germany: 29-82, 2007.
Title:Odhiambo A, Perlman DH, Huang H, Costello CE, Farber HW, Steinberg MH, McComb ME, Klings ES.
Date:2008-02-21
Body:
Identification of oxidative post-translational modification of plasma albumin in patients with pulmonary hypertension of sickle cell anemia. Rapid Commun Mass Spectrom 21: 2195-2203, 2007.
Title:Orchard S, Montechi-Palazzi L, Deutsch EW, Binz P-A, Jones AR, Paton N, Pizarro A, Creasy DM, Wojcik J and Hermjakob H.
Date:2007-10-07
Body:
Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France. Proteomics. 7, 3436–3440, 2007.
Body:Genome-wide analysis of human HSF1 signaling reveals a transcriptional program linked to cellular adaptation and survival. Mol BioSys 2: 627-39, 2006.
Body:The implications of proteolytic background for shotgun proteomics. Mol Cell Proteomics 6(9): 1589-98, 2007.
Body:Is Phospholamban or Troponin I the “Prima Donna” in β-Adrenergic Induced Lusitropy? Circ Res 101: 326-7, 2007.
Title:Randriamboavonjy V, Pistrosch F, Bölck B, Schwinger RH, Dixit M, Badenhoop K, Cohen RA, Busse R, Fleming I.
Date:2008-01-01
Body:
Platelet sarcoplasmic endoplasmic reticulum Ca2+-ATPase and mu-calpain activity are altered in type 2 diabetes mellitus and restored by rosiglitazone.Circulation 117(1):52-60, 2008.
Body:Proteomic mapping of stimulus-specific signaling pathways involved in THP-1 cells exposed to porphyromonas gingivalis or its purified components. Proteomics Res 6: 2211-2221, 2007.
Body:Concentration-dependent effects on the rapid and efficient activation of MAPK. Proteomics 7(6): 890-899, 2007.
Body:Quantification of oxidative posttranslational modifications of cysteine thiols of p21ras associated with redox modulation of activity using isotope-coded affinity tags and mass spectrometry. Free Radic Biol Med 42, 823-829, 2007.
Body:
Isotope-coded affinity tag (ICAT) approach to redox proteomics: Identification and quantification of oxidant-sensitive protein thiols. In Redox Proteomics: from Protein Modifications to Cellular Dysfunction and Diseases. Dalle-Donne I, Scaloni A, Butterfield DA, Eds; Wiley-Interscience: 267-285, 2006.
Title:Shifman MA, Li Y, Colangelo CM, Stone KL, Wu TL, Cheung KH, Miller PL, Williams KR.
Date:2007-10-06
Body:YPED: a web-accessible database system for protein expression analysis. J Proteome Res 6(10): 4019-24, 2007.
Body:
Assessment approach for evaluating high abundance protein depletion methods for cerebrospinal fluid (CSF) proteomic analysis. J Proteome Res 6(9): 3739-51, 2007.
Body:The neurohormone orexin stimulates hypoxia-inducible factor-1 activity. Genes & Devel 21: 2995-3005, 2007.
Body:Relative quantification of peptide phosphorylation in a complex mixture using 18O labeling. Physiol Genomics 31(2): 357-63, 2007.
Body:High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites. Mol Cell Proteomics 6(10): 1809-17, 2007.
Body:Identification of Proteins Based on MS/MS Spectra and Location of Post-translational Modifications in Methods in Molecular Biology: Peptide Characterization and Application (Fields, G. ed) Humana Press, Totowa, NJ: 57-77, 2007.
Title:Takemura Y, Ouchi N, Shibata R, Aprahamian T, Kirber MT, Summer RS, Kihara S, Walsh K.
Date:2007-02-01
Body:Adiponectin modulates inflammatory reactions via calreticulin receptor–dependent clearance of early apoptotic bodies. J Clin Invest 117, 375-386, 2007.
Title:Tilton RG, Haidacher SJ, Lejeune WS, Zhang X, Zhao Y, Kurosky A, Brasier AR, Denner L.
Date:2007-05-07
Body:Diabetes-induced changes in the renal cortical proteome assessed with two-dimensional gel electrophoresis and mass spectometry. Proteomics 7(10): 1729-1742, 2007.
Body:Investigating MS2/MS3 matching statistics: A model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence. Mol Cell Proteomics 7(1): 71-87, 2008.
Body:Automated smoother for numerical decoupling of dynamic models. BMC Bioinformatics 8: 305, 2007.
Body:Understanding through Modeling. In: Systems Biology: Principles, Methods, and Concepts. A.K. Konopka (Ed.) CRC Press/Taylor & Francis Books, Boca Raton, pp. 27-82, 2007.
Body:
Dynamic interplay between O-linked N-acetylglucosaminylation and glycogen synthase kinase-3-dependent phosphorylation. Mol Cell Proteomics 6.8: 1365-79, 2007.
Body:Cardiovascular proteomics: past, present, and future. Mol Diagn Ther 11(2):83-95, 2007.
Title:Wu X, Wang J, Cui X, Maianu L, Rhees B, Rosinski J, So WV, Willi SM, Osier MV, Hill HS, Page GP, Allison DB, Martin M, Garvey WT.
Date:2007-02-01
Body:
The effect of insulin on expression of genes and biochemical pathways in human skeletal muscle. Endocrine 31: 5-17, 2007
Title:Xie B, Luo X, Zhao C, Priest CM, Chan S-Y, O'Connor PB, Kirschner DA, Costello CE.
Date:2007-12-01
Body:Molecular characterization of myelin protein zero in Xenopus laevis peripheral nerve: Equilibrium between non-covalently associated dimer and monomer. Int J Mass Spectrom 268: 304-315, 2007.
Body:Regulation of the protein disulfide proteome by mitochondria in mammalian cells. Proc Natl Acad Sci 104: 10813-10817, 2007.
Body:Thiol oxidation in signaling and response to stress: detection and quantification of physiological and pathophysiological thiol modifications. Free Radic Biol Med 43, 1099-108, 2007.
Body:Cysteine-674 of the sarco/endoplasmic reticulum calcium ATPase is required for the inhibition of cell migration by nitric oxide. Arterioscler Thromb Vasc Biol 27: 783-790, 2007.
Body:
PARE: a tool for comparing protein abundance and mRNA expression data. BMC Bioinformatics 8: 309, 2007.
Body:Dynamics of the hypoxia-inducible factor-1-vascular endothelial growth factor promoter complex. J Biol Chem. 282, 35035 – 35045, 2007.
Body:
A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry. Comp Bio and Chem (31): 215-221, 2007.
Body:Removal of polyethylene glycols from protein samples using titanium dioxide. Anal Biochem 365: 283-285, 2007.
Body:Development of a robust strategy for the enrichment of phosphorylated proteins and peptides from complex mixtures, 54th ASMS Conference on Mass Spectrometry, May 28 - June 1, 2006.
Body:High Probability MS Identification of Phosphopeptides by their Mass Defect. 54th ASMS Conference on Mass Spectrometry, May 28 - June 1, 2006.
Body:Allergen-induced lung proteome as a oxidative stress signiture. J Allergy Clin Immunol 115(2S1):S122, 2005.
Body:Synthetic mRNA for Mammalian cells Reprogramming. RNA: 2006 Annual Meeting, Seattle, 2006.
Body:Aligning Peaks Across Multiple Mass Spectrometry Data Sets Using A Scale-Space Based Approach. IEEE Computational Systems Bioinformatics Conference (CSB 2005), August 8-11, 2005, Stanford, CA.
Body:A Software shell for automated MS data conversion and database submission of MS data. Presented at the US-HUPO 3rd Annual Congress, Seattle, WA, March 5-8, 2007.
Title:Perlman DH, Bauer S, Bryan NS, Garcia-Saura MF, Lim CC, Fernandez BO, McComb ME, Costello CE, Feelisch M.
Date:2008-06-03
Body:Integrated time- and dose-resolved proteomic, redox metabonomic, and functional analysis of the cardioprotective effects of nitrite treatment on the heart. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 3-7, 2007.
Title:Romesser PB, Perlman DH, Sinha A, McComb ME, Faller DV, Costello CE, Denis GV.
Date:2007-06-03
Body:Differential proteomic characterization of B cell proliferative states: Analysis of tumor-specific and proliferation-specific proteomes in normal and malignant B cells. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 3-7, 2007.
Body:Identification of oxidant-induced post-translational modifications of GAPDH in endothelial cells using 2D-PAGE and mass spectrometry. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 3-7 2007.
Body:BUDSS: A Software Shell for Automated MS Data Processing and Management. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 3-7, 2007.
Body:Visualizing Quantitative Proteomics Datasets using Treemaps. IEEE Information Visualization, 11th International Conference Proceedings 4: 527 – 534, 2007.
Body:
A phosphoproteomic approach to mapping novel phosphorylation sites in a WNK family kinase. 55th ASMS Conference on Mass Spectrometry, June 3-7 2007, Indianapolis, IN.
Body:Improving Mass Spectrometry Peak Detection Using Multiple Peak Alignment Results. Sixth International Conference on Bioinformatics (InCoB 2007), Hong Kong, China, August 27-31, 2007.
Body:Improving Mass Spectrometry Peak Detection Using Multiple Peak Alignment Results. 5th International Conference on Pathways, Networks, and Systems, Porto Heli, Greece, June 24-29, 2007.
Body:A New Protocol of Analyzing Isotope Coded Affinity Tag Data from High Resolution LC-MS Spectrometry. Pacific Symposium on Biocomputing, Maui, Hawaii, USA, January 3-7, 2007.
Body:Current Status of Microfluidics in Proteomics Rsearch. US Proteome Organization, Seattle WA, March 4-7, 2007.
Body:Fabrication of On-chip Reverse Phase Monolithic Column Arrays for ESI-MS Proteomic Analysis. 55th ASMS Conference on Mass Spectrometry and Allied Topics, June 3-7, 2007, Indianapolis, IN.
Body:Porous Alumina Surface as a Dual Laser Desorption Ionization (LDI) Desorption Electrospray Ionization (DESI) Platform for Increased Peptide Coverage. 55th ASMS Conference on Mass Spectrometry and Allied Topics, June 3-7, 2007, Indianapolis, IN.
Body:Yield Optimization of Saccharomyces cerevisiae using a GMA Model and a MILP-based piecewise linear relaxation method. Proceedings of: Foundations of Systems Biology in Engineering, Santa Barbara, CA, August 7-10, 2005.
Body:
Desorption Electrospray Ionization Using a Porous Alumina Surface. Proceedings of the ASME 2007 Summer Bioengineering Conference (SBC2007), June 20-24, 2007, Keystone, CO.
Body:Assesment Approach for Evaluating High Abundance Protein Depletion Methods for Cerebrospinal Fluid Proteomic Analysis. 55th ASMS Conference on Mass Spectrometry and Allied Topics, June 3-7, 2007, Indianapolis, IN.
Body:PeptideAtlas: Resource for Target Selection for Emerging Targeted Proteomics Workflows. US HUPO 4th Annual Conference, North Bethesda, MD, March 16-19, 2008.
Title:Deutsch EW, Choi H, Eddes J, Eng J, Lam H, Malmstroem J, Mendoza L, Nesvizhskii A, Shteynberg D, Tasman J, Aebersold R.
Date:2008-03-16
Body:New Functionality for the Trans-Proteomic Pipeline: Improving the PeptideProphet Classifier. US HUPO 4th Annual Conference, North Bethesda, MD, March 16-19, 2008.
Title:Letarte S, Chen J, Brusniak M-Y, Nimeus E, Mirzae H, King N, Didion J, Lange V, Domon B, Watts J, Aebersold R.
Date:2008-03-16
Body:Absolute Quantification of Plasma Glycoproteins by Multiple Reaction Monitoring Mass Spectrometry of Proteotypic Peptides from a Hypotheis-Driven Biomarker Discovery Platform. US HUPO 4th Annual Conference, North Bethesda, MD, March 16-19, 2008.
Title:Thaminy S, Brusniak M-Y, Chen J, Zhou Y, Letarte S, Sheu C, Watts JD, Aebersold R.
Date:2008-03-16
Body:A Label-Free Quantitative Proteomics Study To Identify Breast Cancer Biomarker In Response To Hypoxia Treatment. US HUPO 4th Annual Conference, North Bethesda, MD, March 16-19, 2008.
Title:Zhou Y, Brusniak M-Y, Thaminy S, Eddes J, Bodenmiller B, Mueller LN, Watts JD,Aebersold R.
Date:2008-03-16
Body:Quantitative Phosphoproteome Analysis via Label-free Proteomics: Applications to Hypoxia Stress in Breast Cancer Cells. US HUPO 4th Annual Conference, North Bethesda, MD, March 16-19, 2008.
Body:
Structural Proteomics of Biological Complexes. Bethesda, MD; Sponsored by NCRR, April 2003.
Title:Qi H, Redding D, Kurosky A, Singh B, Boldogh I, Soman, K, Grant JA, Cardenas V, Sur S.
Date:2009-03-13
Body:Identification of Biomarkers in Nasal Lavage fluid (NLF) Associated with Early and Late Phase Symptoms Induced by Intranasal challenge with Ragweed Extract (RWE). AAAI Meeting – March 13-17, 2009 Washington, DC.
Body:Identification of Candidate Proteins in Ragweed Extract (RWE) serves as alarmins that produce ROS and Induce Th2 Cytokine Production. AAAI Meeting – March 13-17, 2009 Washington, DC.
Title:Muri H, Redding D, Gonzalez K, Singh B, Kalita A, Qi H, Cardinas Jr. V, Sur, S.
Date:2009-03-13
Body:Pollen NADPH oxidases increase intracellular ROS (iROS) and Il5 production from PBMC of ragweed allergic patients with late phase symptoms to intranasal ragweed challenge. AAAI Meeting – March 13-17, 2009 Washington, DC.
Body:Isolation of N-linked glycopeptides from plasma. Anal Chem 79(15): 5826-37, 2007.
Title:Leopold JA, Dam A, Maron BA, Scribner AW, Liao R, Handy DE, Stanton RC, Pitt B, Loscalzo J.
Date:2008-02-13
Body:Aldosterone impairs vascular reactivity by decreasing glucose-6-phosphate dehydrogenase activity. Nature Med 13(2):189-197, 2007.
Body:Redox regulation in the extracellular environment. Circ J. 72(1):1-16, 2008.
Body:High glucose oxidizes SERCA cysteine-674 and prevents inhibition by nitric oxide of smooth muscle cell migration. J Mol Cell Cardiol 44(2):361-9, 2008.
Title:Zuccollo A, Shi C, Mastroianni R, Maitland-Toolan KA, Weisbrod RM, Zang M, Xu S, Jiang B, Oliver-Krasinski JM, Cayatte AJ, Corda S, Lavielle G, Verbeuren TJ, Cohen RA.
Date:2005-11-08
Body:The Thromboxane A2 receptor antagonist, S18886, prevents enhanced atherogenesis caused by diabetes mellitus. Circulation 112(19):3001-8, 2005.
Body:Tandem time-of-flight (TOF/TOF) mass spectrometry and the curved-field reflectron. J Chromatogr B Analyt Technol Biomed Life Sci 855(1):2-13, 2007.
Body:Is KIR6.1 a subunit of mitoKATP? Biochem Biophys Res Commun 366(3):649-56, 2008.
Body:Repairing the myofilaments to heal the heart. Am J Physiol Heart Circ Physio 293(2):H907-8, 2007.
Body:A rapid, economic and reproducible method for human serum delipidation, albumin and IgG removal for proteomic analysis. Methods in Molecular Biology Series: Cardiovascular Proteomics (ed. F. Vivanco) The Humana Press Inc. Totowa, NJ 2005, Volume 357: 365-371, 2007.
Body:Electrophoresis in nanochannels: brief review and speculation. J Nanobiotechnology 4:12, 2006.
Body:Use of a double resonance electron capture dissociation experiment to probe fragment intermediate life times. J Am Soc Mass Spectrom 17, 1605-15, 2006. Epub 2006 Aug 9. Erratum in: J Am Soc Mass Spectrom 18, 165, 2007.
Body:Troponin Fragments-Diagnostic potential? in Cardiac Biomarkers in the management of cardiac disease. (DA Morrow, ed.) Contemporary Cardiology series, pp 161-176, 2006.
Body:
Cardioprotection by N-Acetylglucosamine Linkage to Cellular Proteins. Circulation 117(9):1172-82, 2008
Body:Genetics, Genomics and Proteomics in Sudden Cardiac Death” In “Cardiac Arrest - The Science and Practice of Resuscitation Medicine 2nd ed." (eds. NA. Paradis, H Halperin, K B Kern, V Wenzel and DA Chamberlain) Cambridge University Press, 2007.
Title:Liu YV, Hubbi ME, Pan F, McDonald KR, Mansharamani M, Cole RN, Liu JO, Semenza GL.
Date:2007-12-21
Body:Calcineurin promotes hypoxia-inducible factor 1alpha expression by dephosphorylating RACK1 and blocking RACK1 dimerization. J Biol Chem 282 (51):37064-73, 2007.
Title:Madsen LH, Christensen G, Lund T, Serebruany VL, Granger CB, Hoen I, Grieg Z, Alexander JH, Jaffe AS, Van Eyk JE, Atar D.
Date:2006-11-10
Body:Time Course of Degradation of Cardiac Troponin I in Patients With Acute ST-Elevation Myocardial Infarction. The ASSENT-2 Troponin Substudy. Circ Res 99: 1141-7, 2006.
Title:Tao G, Kirby C, Whelan S, Rossi F, Bi X, MacLaren M, Gentalen E, O'Neill R, Hart G, Omary M.
Date:2006-12-22
Body:Reciprocal keratin 18 Ser48 O-GlcNAcylation and Ser52 phosphorylation using peptide analysis. Biochem Biophys Res Commun 351(3):708-12, 2006.
Title:Yamanaka S, Li J, Kania G, Elliott S, Wersto RP, Van Eyk J, Wobus AM, Boheler KR.
Date:2008-01-01
Body:Pluripotency of embryonic stem cells. Cell Tissue Res 331(1):5-22, 2008.
Body:Myosin binding protein C has increased phosphorylation upon myocardial stunning. Proteomics 6: 4176-4186, 2006.
Body:A comparison of 2-D chromatography separations using UV and (18)O quantification of proteins in similar proteomes. J Separation Sci 31(2):314-20, 2008.
Body:Quantifying raft proteins in neonatal mouse brain by 'tube-gel' protein digestion label-free shotgun proteomics. Proteome Sci 5:17, 2007.
Body:Fragmentation of Multiply-Charged Intact Protetin Ions Using MALDI TOF-TOF Mass Spectrometry. J Am Soc Mass Spectrometry, 19(2):231-8, 2008.
Body:Optimization of biotechnological systems through geometric programming. Theor Biol Med Model 4:38, 2007.
Title:Stanislaus R, Arthur JM, Rajagopalan B, Moerschell R, McGlothlen B, Almeida JS.
Date:2008-01-07
Body:An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis. BMC Bioinformatics 9: 4, 2008.
Body:Proteomic studies of pancreatic cancer. Proteomics 1(12): 1582-1591, 2007.
Body:Quantitative analysis of snake venom by soluble polymer-based isotope labeling. Mol Cell Proteomics 7(4): 785-99, 2008.
Title:Klimek J, Eddes JS, Hohmann L, Jackson J, Peterson A, Letarte S, Gafken PR, Katz JE, Mallick P, Lee H, Schmidt A, Ossola R, Eng JK, Aebersold R, Martin DB.
Date:2008-01-07
Body:The Standard Protein Mix Database: A diverse dataset to assist in the production of improved peptide and protein identification software tools. J Proteome Res 7(1): 96-103, 2008.
Title:Mueller LN, Rinner O, Schmidt A, Letarte S, Bodenmiller B, Brusniak M, Vitek O, Aebersold R, Mueller, M.
Date:2007-08-28
Body:
SuperHirn - a novel tool for high resolution LC-MS based peptide/protein. Proteomics 7(19): 3470-80, 2007.
Body:An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. J Proteome Res 4;7(1): 51-61, 2008.
Body:Soluble polymers-based isotopic labeling (SoPIL): a new strategy to discover protein biomarkers? Expert Review of Proteomics 4(5): 603-7., 2007.
Body:Autoantigen arrays for multiplex analysis of antibody isotypes. Proteomics 6(21):5720-4, 2006.
Title:Hueber W, Tomooka BH, Zhao X, Kidd BA, Drijfhout JW, Fries JF, Van Venrooij WJ, Metzger AL, Genovese MC, Robinson WH.
Date:2007-06-07
Body:Proteomic analysis of secreted proteins in early rheumatoid arthritis: Anti-citrulline reactivity is associated with upregulation of proinflammatory cytokines. Ann Rheum Dis. 66:712-9, 2007.
Body:Detection of 100 aM fluorophores using a high sensitivity on-chip CE system and transient i sotachophoresis. Anal Chem 78(7): 2319-27, 2007.
Body:Role of MHC-linked genes in autoantigen selection and renal disease in a murine model of SLE. J Immunol 177:7423-34, 2006.
Title:Brasier AR, Victor S, Boetticher G, Ju H, Lee C, Bleecker ER, Castro M, Busse WW, Calhoun WJ.
Date:2008-01-01
Body:Molecular phenotyping of severe asthma using pattern recognition of bronchoalveolar lavage-derived cytokines. J Allergy Clin Immunol 121:30-37.e6, 2008
Body:Inhibiting pollen NADPH oxidase-induced signal by intrapulmonary administration of antioxidants blocks allergic airway inflammation. J Allergy Clin Immunol 119:646-53, 2007.
Title:Haeberle H, Casola A, Gatalica Z, Petronella S, Dieterich H-J, Ernst PB, Brasier AR, Garofalo RP.
Date:2004-03-01
Body:IkappaB kinase is a critical regulator of chemokine expression and lung inflammation in respiratory syncytial virus infection. J Virol 78(5):2232-4, 2004.
Body:Determination and stochastic models of NFkB pathway. Cardiovasc Toxicol 7(4):215-34, 2007.
Title:Recinos A 3rd, Lejeune WS, Sun H, Lee CY, Tieu BC, Lu M, Hou T, Boldogh I, Tilton RG, Brasier AR.
Date:2007-09-01
Body:Angiotensin II Induces IL-6 Expression and the Jak-STAT3 Pathway in Aortic Adventitia of LDL Receptor-Deficient Mice. Atheriosclerosis 194(1):125-33, 2007.
Title:Welliver TP, Garofalo RP, Hosakote Y, Hintz KH, Avendano L, Sanchez K, Velozo L, Jafri H, Chavez-Bueno S, Ogra PL, McKinney L, Reed JL, Welliver RC Sr.
Date:2007-04-15
Body:Severe human lower respiratory tract illness caused by respiratory syncytial virus and influenza virus is characterized by the absence of pulmonary cytotoxic lymphocyte responses. J Infect Dis 195(8):1126-36, 2007.
Title:Elayadi AN, Samli KN, Prudkin L, Liu Y, Bian A, Xie X, Wistuba II, Roth JA, McGuire MJ, Brown KC.
Date:2007-06-15
Body:A peptide selected by biopanning identifies the integrin αvβ6 as a prognostic biomarker for non-small cell lung cancer. Cancer Res 67: 5889-5895, 2007.
Body:A general system for evaluating the efficiency of chromophore-assisted light inactivation (CALI) of proteins reveals Ru(ii) tris-bipyridyl as an unusually efficient "warhead". Mol Biosyst 4(1):59-65, 2008.
Body:Improving mass spectrometry peak detection using multiple peak alignment results. J Proteome Res 7(1):123-9, 2008.
Title:Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, and Gardner TS.
Date:2007-01-01
Body:Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol. 5(1):e8, 2007.
Body:
Diganostic and prognistic biomarkers in acute renal failure. Contrib. Nephrol 160:53-64, 2008.
Body:AMP-Activated Protein Kinase and P38 MAPK Activate O-GlcNAcylation of Neuronal Proteins During Glucose Deprivation. J Biol Chem. 9;283(19):13009-20, 2008.
Body:Protein arrays on patterned porous gold substrates interrogated with mass spectrometry: detection of peptides in plasma. Anal Chem 80(5):1448-58, 2008.
Body:Human Proteinpedia enables sharing of human protein data. Nat Biotechnol. 26(2):164-7, 2008.
Body:Identification of O-GlcNAc sites on proteins. Methods Enzymol 415:113-33, 2006.
Title:Lange V, Malmström JA, King N, Johansson B, Deutsch E, Rameseder J, Björck L, Domon B, Aebersold R.
Date:2008-04-12
Body:
Targeted quantitative mass spectrometric analysis of Streptococcus pyogenes virulence factors by multi-reaction monitoring. Mol Cell Proteomics 7(8):1489-500, 2008.
PMID: 18408245
PMID: 18408245
Title:Mallick P, Schirle M, Chen SS, Flory MR, Lee H, Martin D, Ranish J, Raught B, Schmitt R, Werner T, Kuster B, Aebersold R.
Date:2008-05-12
Body:Computational prediction of proteotypic peptides for quantitative proteomics. Nat Biotechnol 25(1):125-31, 2007.
Body:Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics. Mol Cell Proteomics. (4):813-23, 2008.
Title:Prakash, A, Piening B, Whiteaker J, Zhang H, Shaffer SA, Martin D, Hohmann L, Cooke K, Olson JM, Hansen S, Flory MR, Lee H, Watts J, Goodlett DR, Aebersold R, Paulovich A, Schwikowski B.
Date:2008-05-06
Body:
Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics. Mol Cell Proteomics 6(10):1741-1748, 2007.
Body:Identification and characterization of SAP25, a novel component of the mSin3 corepressor complex. Mol Cell Biol. 26(4):1386-97, 2006.
Body:
O-linked beta-N-acetylglucosaminyltransferase substrate specificity is regulated by myosin phosphatase targeting and other interacting proteins. J Biol Chem. 2008;283(49):33935-41.
Body:Control and regulation of mitochondrial energetics in an integrated model of cardiomyocyte function. Biophys J. 2009; 96(6):2466-78.
Body:Use of nanoporous alumina surface for desorption electrospray ionization mass spectrometry in proteomic analysis. Biomed Microdevices 10(4):531-8, 2008. PMID: 18204903
Body:PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows. US HUPO 4th Annual Conference, North Bethesda, MD, March 16-19, 2008. EMBO Reports May 9(5): 429-34, 2008.
Body:Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics. Physiol Genomics 33: 18-25, 2008.
Title:Pflieger D, Jünger MA, Müller M, Rinner O, Lee H, Gehrig PM, Gstaiger M, Aebersold R.
Date:2008-02-07
Body:Quantitative proteomic analysis of protein complexes: concurrent identification of interactors and their state of phosphorylation. Mol Cell Proteomics 7: 326-46, 2008.
Title:Rinner O, Seebacher J, Walzthoeni T, Mueller L, Beck M, Schmidt A, Mueller M, Aebersold R.
Date:2008-04-05
Body:
Identification of cross-linked peptides from large sequence databases. Nat Methods 5(4): 315-18, 2008.
Body:
Quantitative proteomic analysis to profile dynamic changes in the spatial distribution of cellular proteins. In D. Pflieger & J. Rossier. (Eds.), Methods in Molecular Biology v432: Organelle Proteomics (pp. 389-401). Totowa, NJ: Humana, 2008.
Body:Application of RNase in the purification of RNA-binding proteins. Anal Biochem 365(1):147-8, 2007.
Body:Characterization of heparin-living bacteria interactions by chemiluminescence electrophoretic mobility shift assay. Anal Biochem 363(2):312-4. 2007.
Body:Single TNFalpha trimers mediating NF-kappaB activation: stochastic robustness of NF-kappaB signaling. BMC Bioinformatics 8:376, 2007.
Body:Modeling stochasticity in gene regulation: characterization in the terms of the underlying distribution function. Bull Math Biol 69(5):1567-601, 2007.
Body:Mango ripening--chemical and structural characterization of pectic and hemicellulosic polysaccharides. Carbohydr Res 340(7):1335-42, 2005.
Body:Construction and evaluation of an automated light directed protein-detecting microarray synthesizer. IEEE Trans Nanobioscience. 7(1):20-7, 2008.
Body:Nome della Proteina: a protein identification resolution database. IEEE Eng Med Biol Mag 26(4):70-2, 2007.
Body:A peptoid "antibody surrogate" that antagonizes VEGF receptor 2 activity. J Am Chem Soc. 30;130(17):5744-52, 2008.
Body:Chemical rescue of F508-CFTR mimics genetic repair in cystic fibrosis bronchial epithelial cells. Mol Cell Proteomics 7(6):1099-110, 2008.
Body:Detecting and Aligning Peaks in Mass Spectrometry Data with Applications to MALDI. Comput Biol Chem 30: 27-38, 2006.
Title:Bodenmiller B, Campbell D, Gerrits B, Lam H, Jovanovic M, Picotti P, Schlapbach R, Aebersold R.
Date:2008-12-26
Body:PhosphoPep - a dtabase of protein phosphorylation sites in model organisms. Nat Biotechnol 26: 1339-40, 2008. PMID: 19060867
Title:Zhang Q, Menon R, Deutsch EW, Pitteri SJ, Faca VM, Wang H, Newcomb LF, Depinho RA, Bardeesy N, Dinulescu D, Hung KE, Kucherlapati R, Jacks T, Politi K, Aebersold R, Omenn GS, States DJ, Hanash SM.
Date:2008-06-03
Body:A Mouse Plasma Peptide Atlas as a Resource for Disease. Genome Biology 9: R39, 2008.
Title:Taylor CF, Field D, Sansone SA, Aerts J, Apweiler R, Ashburner M, Ball CA, Binz PA, Bogue M, Booth T, Brazma A, Brinkman RR, Michael Clark A, Deutsch EW, Fiehn O, Fostel J, Ghazal P, Gibson F, Gray T, Grimes G, Hancock JM, Hardy NW, Hermjakob H, Julian RK Jr, Kane M, Kettner C, Kinsinger C, Kolker E, Kuiper M, Le Novère N, Leebens-Mack J, Lewis SE, Lord P, Mallon AM, Marthandan N, Masuya H, McNally R, Mehrle A, Morrison N, Orchard S, Quackenbush J, Reecy JM, Robertson DG, Rocca-Serra P, Rodriguez H, Rosenfelder H, Santoyo-Lopez J, Scheuermann RH, Schober D, Smith B, Snape J, Stoeckert CJ Jr, Tipton K, Sterk P, Untergasser A, Vandesompele J, Wiemann S.
Date:2008-08-26
Body:Promoting Coherent Minimum Reporting Guidelines for Biological and Biomedical Investigations: the MBBI project. Nat Biotech 26: 889, 2008.
Title:Rubio E, Reiss DJ, Disteches CM, Filippova GN, Baliga NS, Abersold R, Ranish J.
Date:2008-06-17
Body:CTCF Physically Links Cohesin to Chromatin. 105(24): 8309-14, 2008. PMID: 18550811
Title:Qi Y, Ranish JA, Zhu X, Krones A, Zhang J, Aebersold R, Rose DW, Rosenfeld MG, Carriere C.
Date:2008-02-19
Body:Atbf1 is Required for th Pit1 Gene Early Activation. Proc Natl Acad Sci USA 105: 2481-6, 2008. PMID: 2268162
Body:A Report on the Annual Spring Meeting of the Proteomics Standards Initiative, Toledo, Spain 23-25th. Proteomics 8(20): 4168-72, 2008.
Body:Quantification of the Compositional Information Provided by Immoniumm Ions on a Quadrupole-Time-of-Flight-Mass Spectrometer. Anal Chem 80: 5596-606, 2008.
Body:
Quantitative Proteomic Identification of MAZ as a Transcriptional Regulator of Muscle-Specific Genes in Skeletal and Cardiac Myocytes. Mol Cell Biol 28: 6521-35, 2008.
Title:Taylor CF, Binz PA, Aebersold R, Affolter M, Barkovich R, Deutsch EW, Horn DM, Hühmer A, Kussmann M, Lilley K, Macht M, Mann M, Müller D, Neubert TA, Nickson J, Patterson SD, Raso R, Resing K, Seymour SL, Tsugita A, Xenarios I, Zeng R, Julian RK Jr.
Date:2008-08-26
Body:MIAPE: Guidelines for Reporting the Use of Mass Spectrometry in Proteomics. Nat Biotech 26(8): 860-1, 2008.
Title:Connors LH, Jiang Y, Budnik M, Théberge R, Prokaeva T, Bodi KL, Seldin DC, Costello CE, Skinner M.
Date:2007-12-11
Body:Heterogeneity in Primary Structure, Post-Translational Modifications, and Gemline Gene Usage of Nine Full-Length Amyloidogenic 1-Immunoglobuin Light Chains. Biochemistry 49: 14259-7, 2007.
Body:Expression, purification, and in vitro cysteine-10 modification of native sequence recombinant human transthyretin. Protein Expr Purif 53(2): 370-7, 2007.
Title:Lavatelli F, Perlman DH, Spencer B, Prokaeva T, McComb ME, Théberge R, Connors LH, Bellotti V, Seldin DC, Merlini G, Skinner M, Costello CE.
Date:2008-08-07
Body:Amyloidogenic and Associated Proteins in Systemic Amyloidosis Proteome of Adipose Tissue. Mol Cell Proteomics 7 (8): 1580-83, 2008.
Body:The Effect of Fixed Charge Modifications on Electron Capture Dissociation. J Am Soc Mass Spectrometry 19: 1514-26, 2008.
Body:Use of 18O labels to monitor deamidation during protein and peptide sample processing. J Am Soc Mass Spectrom 19(6): 855-64, 2008.
Title:Lieb W, Benndorf RA, Benjamin EJ, Sullivan LM, Maas R, Xanthakis V, Schwedhelm E, Aragam J, Schulze F, Böger RH, Vasan RS.
Date:2008-08-28
Body:
Plasma asymmetric dimethylarginine, l-arginine and left ventricular structure and function in a community-based sample. Atherosclerosis 2008 Aug 28.
Body:First signal on the cryogenic Fourier-transform ion cyclotron resonance mass spectrometer. J Am Soc Mass Spectrom 18(12): 2090-3, 2007.
Body:In vitro selection and characterization of cellulose-binding RNA aptamers using isothermal amplification. Nucleosides Nucleotides Nucleic Acids. 27(8):949-66, 2008.
Body:First signal on the cryogenic Fourier-transform ion cyclotron resonance mass spectrometer. J Am Soc Mass Spectrom 18(12): 2090-3, 2007.
Body:A low-noise, wideband preamplifier for a Fourier-transform ion cyclotron resonance mass spectrometer. J Am Soc Mass Spectrom 18(12): 2233-41, 2007.
Body:CD40–CD40 ligand interactions in oxidative stress, inflammation and vascular disease. Trends Mol Med 14(12): 350-8, 2008.
Body:Collisionally Activated Dissociation and Electron Capture Dissociation Provide Complementary Structural Information for Branched Permethylated Oligosaccharides. J Am Soc Mass Spectrom 19(1): 138-50, 2008.
Title:Aggarwal S, Brennen WN, Kole TP, Schneider E, Topaloglu O, Yates M, Cotter RJ, Denmeade SR.
Date:2008-01-22
Body:Fibroblast activation protein peptide substrates identified from human collagen I derived gelatin cleavage sites. Biochemistry 47: 1076-86, 2008.
Title:Agnetti G, Bezstarosti K, Dekkers DH, Verhoeven AJ, Giordano E, Guarnieri C, Caldarera CM, Van Eyk JE, Lamers JM.
Date:2008-07-01
Body:Proteomic profiling of endothelin-1-stimulated hypertrophic cardiomyocytes reveals the increase of four different desmin species and alpha-B-crystallin. Biochem Biophys Acta 1784(7-8): 1068-76, 2008.
Body:Cleavage of ß-N-Acetylglucosaminidase cleavage by caspase-3 during apoptosis. J Biol Chem 283: 23557-23566, 2008.
Body:
Applications of proteomics to lab diagnosis. Annu Rev Pathol 3: 485-98, 2008.
Title:Chaerkady R, Harsha HC, Nalli A, Gucek M, Vivekanandan P, Akhtar J, Cole RN, Simmers J, Schulick RD, Singh S, Torbensen M, Pandey A, Thuluvath PJ.
Date:2008-10-07
Body:
A Quantitative Proteomic Approach for Identification of Biomarkers in Hepatocellular Carcinoma. J Proteome Res 7: 4289-98, 2008.
Body:
Cross-talk between GlcNAcylation and phosphorylation: roles in insulin resistance and glucose toxicity. Am J Physiol Endocrinol Metab 295:E17-28, 2008.
Body:The interplay between MYC and HIF in cancer. Nat Rev Cancer 8(1): 51-6, 2008.
Body:What can mitochondrial proteomics tell us about cardioprotection afforded by preconditioning? Expert Rev Proteomics 5: 633-6, 2008.
Body:A novel role for proteomics in discovery of cell-surface markers on stem cells: Scratching the surface. Proteomics Clin Appl 2:892-0-3, 2008.
Body:The Albuminome as a Tool for Biomarker Discovery. Clinical Proteomics 263-278, 2007.
Body:Quantitative proteomics using stable isotope labeling with amino acids in cell culture. Nat Protoc 3(3): 505-16, 2008.
Body:Cardiac myofilaments from proteome to pathophysiology. Proteomics-Clinical Applications 2: 800–10, 2008.
Body:iTRAQ analysis of complex proteome alterations in 3xTgAD Alzheimer's mice: understanding the interface between physiology and disease. PLoS ONE 3: e2750, 2008.
Body:Biomarker discovery: proteome fractionation and separation in biological samples. Physiol Genomics 33(1): 12-7, 2008.
Body:Recent advances in understanding Marfan syndrome: should we now treat surgical patients with losartan? J Thorac Cardiovasc Surg 135(2): 289-94, 2008.
Body:
Comprehensive comparison of collision induced dissociation and electron transfer dissociation. Anal Chem 80: 4825-4835, 2008.
Title:Pearson GD, Devereux R, Loeys B, Maslen C, Milewicz D, Pyeritz R, Ramirez F, Rifkin D, Sakai L, Svensson L, Wessels A, Van Eyk J, Dietz HC.
Date:2008-08-12
Body:Report of the National Heart, Lung, and Blood Institute and National Marfan Foundation. Working Group on research in Marfan syndrome and related disorders. Circulation 118: 785-91, 2008.
Title:Santhanam l, Gucek M, Brown TR, Ryoo S, Lemmon C, Romer L, Shoukas AA, Berkowitz DE, and Cole RN.
Date:2009-01-07
Body:
Selective Fluorescent Labeling of S-nitrosothiols (S-FLOS): A Novel Method for Studying S-nitrosylation. Nitric Oxide 19: 295-302, 2008.
Body:A Mitotic GlcNAcylation/Phosphorylation Signaling Complex Alters the Post-Translational State of the Cytoskeletal Protein Vimentin. Mol Cell Biol 19: 4130-4314, 2008.
Body:
Proteomics of the aqueous humor in healthy New Zealand rabbits. Proteomics 7(23): 4358-75, 2007.
Title:Tarasov KV, Tarasova YS, Tam WL, Riordon DR, Elliott ST, Kania G, Li J, Yamanaka S, Crider DG, Testa G, Li RA, Lim B, Stewart CL, Liu Y, Van Eyk JE, Wersto RP, Wobus AM, Boheler KR.
Date:2008-06-25
Body:B-MYB is essential for normal cell cycle progression and chromosomal stability of embryonic stem cells. PLoS ONE 3:e2478, 2008.
Body:OMSSAGUI: An open-source user interface component to configure and run the OMSSA search engine. Proteomics 8(12): 2376-8, 2008.
Body:Cross-talk between GlcNAcylation and Phosphorylation: Site-Specific Phosphorylation Dynamics in Response to Globally Elevated O-GlcNAc. Proceedings Natl Acad Sci 105: 13793–13798, 2008.
Body:Regulation of the O-GlcNAc Transferase by Insulin Signaling. J Biol Chem 283: 21411–17, 2008.
Body:Revealing the role of phosphatidylserine in shear stress-mediated protection in endothelial cells. Endothelium15(4): 225-0, 2008.
Body:Ion-Ion Reactions with Fixed-Charge Modified Proteins to Produce Ions in a Single, Very High Charge State. Int J Mass Spectrom 276: 136-143, 2008.
Body:Charge Assisted Laser Desorption/Ionization Mass Spectrometry of Droplets. J Mass Spectrom 19: 833-840, 2008.
Body:Identification of cell surface markers to differentiate rat endothelial and fibroblast cells using lectin arrays and LC-ESI-MS/MS. Anal Chem 80(21): 8269-75, 2008.
Body:Fully Integrated Microfluidic Device for Preforming Capillary Electrophoresis and Electrospray Ionization Mass Spectrometry. Anal Chem 80(18): 6881-7, 2008.
Body:18O labeling over coffee break: A rapid strategy for quantitative proteomics. J Proteome Res 7(7): 3042-8, 2008.
Body:Methods and approaches for the comprehensive characterization and quantification of cellular proteomes using mass spectrometry. Physiol Genomics 33(1): 3-11, 2008.
Body:Exploration of structure/activity relationships among foldamer ligands for a specific protein binding site via parallel and split-and-mix library synthesis. J Comb Chem 10(2): 204-15, 2008.
Body:
Sub-Threshold Field Emission from a Thin Silicon Membrane. Appl Physics Letters 91: 183506, 2007.
Title:Sander TL, Ou JS, Densmore JC, Kaul S, Matus I, Twigger S, Halligan B, Greene AS, Pritchard KA Jr, Oldham KT.
Date:2008-04-29
Body:Protein composition of plasminogen activator inhibitor type 1-derived endothelial microparticles. Shock 29(4):504-11, 2008.
Body:Is Charge Reduction in ESI Really Necessary? J Am Soc Mass
Spectrom 19(5): 629-31, 2008.
Spectrom 19(5): 629-31, 2008.
Body:MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis. Genome Res 18(3): 404-11, 2008.
Title:Tian Z, Greene AS, Usa K, Matus IR, Bauwens J, Pietrusz JL, Cowley AW Jr, Liang M.
Date:2008-04-01
Body:
Renal regional proteomes in young Dahl salt-sensitive rats. Hypertension 51(4): 899-904, 2008.
Body:Mass Spectrometry of Acoustically Levitated Droplets. Anal Chem 80, 5847-5853: 2008.
Body:Membrane protein separation and analysis by supercritical fluid chromatography-mass spectrometry. Anal Chem 80: 2590-2598, 2008.
Body:Urinary Biomarkers in Diabetes and Other Glomerular Diseases. Clinical Proteomics: From Diagnosis to Therapy Ed J: Van Eyk and M. Dunn, Wiley-VCH, 297-322, 2008.
Body:
Light-actuated high pressure-resisting microvalve for on-chip flow control based on thermo-responsive nanostructured polymer. Lab Chip 8, 8(7):1198-1204, 2008.
Title:Deus HF, Stanislaus R, Veiga DF, Behrens C, Wistuba II, Minna JD, Garner HR,Swisher SG, Roth JA, Correa AM, Broom B, Coombes K, Chang A, Vogel LH, Almeida JS.
Date:2008-08-13
Body:A Semantic Web management model for integrative biomedical informatics. PLoS ONE 3(8): 2946, 2008.
Body:System Estimation from Metabolic Time Series Data. Bioinformatics 24: 2505-11, 2008.
Title:Hill EG, Schwacke JH, Comte-Walters S, Slate EH, Oberg AL, Eckel-Passow JE, Therneau TM, Schey KL.
Date:2008-08-07
Body:A Statistical Model for iTRAQ Data Analysis. J Proteome Res 7(8): 3091-101, 2008.
Body:Yield Optimization of Regulated Metabolic Systems Using Deterministic Methods. Biotech Bioengin 99(5): 1154-69, 2008.
Body:Parameter optimization in S-system models. BMC Systems Biol 16; 2:35, 2008.
Body:Fluorescence-based analysis of cellular protein lysate arrays using quantum dots. Methods Mol Bio 374: 229-238, 2007.
Title:German DC, Gurnani P, Nandi A, Garner HR, Fisher W, Diaz-Arrastia R, O’Suilleabhain P, Rosenblatt KP.
Date:2007-08-01
Body:Serum biomarkers for Alzheimer’s disease: Proteomic identification. Biomed Pharmacother 61: 383-389, 2007.
Body:Combinatorial selection of a single stranded DNA thioaptamer targeting TGF-beta1 protein. Bioorg Med Chem Lett 18(6): 1835-9, 2008.
Body:Magnesium ion is an effective inhibitor of the binding of Escherichia coli to heparin. J Microbiological Meth 71(3): 340-2, 2007.
Body:Considering dependence among genes and markers for false discovery control in eQTL mapping. Bioinformatics 24: 2015-2022, 2008.
Title:Tourkina E, Richard M, Gööz P, Bonner M, Pannu J, Harley R, Bernatchez PN, Sessa WC, Silver RM, and Hoffman S.
Date:2008-05-01
Body:
Antifibrotic properties of caveolin-1 scaffolding domain in vitro and in vivo. Am J Physiol Lung Cell Mol Physiology 294(5): L843-61, 2008.
Body:
Practical guidelines for assessing power and false discovery rate for a fixed sample size in microarray experiments. Stat Med 27: 1960-1972, 2008.
Body:Serine 23 and 36 phosphorylation of caveolin-2 is differentially regulated by targeting to lipid raft/caveolae and in mitotic endothelial cells. Biochemistry 47(1): 101-111, 2008.
PMID: 18081315
Body:Minimally cationic, cell-permeable miniature proteins by α-helical arginine display. J Am Chem Soc 130(10): 2948-49, 2008.
PMID: 18271592
PMID: 18271592
Title:Schleicher M, Shepherd BR, Suarez Y, Fernandez-Hernando C, Yu J, Pan Y, Acevedo LM, Shadel GS and Sessa WC.
Date:2008-01-14
Body:Prohibitin-1 maintains the angiogenic capacity of endothelial cells by regulating mitochondrial function and senescence. J Cell Bio 180(1): 101-12, 2008.
PMID: 18195103
PMID: 18195103
Title:Rodriguez-Feo JA, Hellings WE, Moll FL, De Vries JP, van Middelaar BJ, Algra A, Sluijter J, Velema E, van der Broek T, Sessa WC, De Kleijn DP, Pasterkamp G.
Date:2008-07-02
Body:Caveolin-1 influences vascular protease activity and is a potential stabilizing factor in human atherosclerotic disease. PLoS ONE. 3(7):e2612, 2008.
PMID: 18596970
PMID: 18596970
Body:Urocortin2 inhibits tumor growth via vascularization and cell proliferation. Proc Natl Acad Sci U S A. 105:3939-3944, 2008.
PMID: 18308934
PMID: 18308934
Title:Lei L, Mason S, Liu D, Huang Y, Marks C, Hickey R, Jovin IS, Pypaert M, Johnson RS, Giordano FJ.
Date:2008-06-01
Body:
Hypoxia-inducible factor-dependent degeneration, failure, and malignant transformation of the heart in the absence of the von Hippel-Lindau protein. Mol Cell Biol 28: 3790-3803, 2008.
PMID: 18285456
Body:Endothelial expression of beta-1 integrin is required for embryonic vascular patterning and postnatal vascular remodeling. Mol Cell Biol 28, 794-802, 2008.
PMID: 17984225
Title:Bodi KL, Lavatelli F, Perlman DH, McComb ME, West J, Costello CE, Skinner M, Seldin DC.
Date:2007-06-01
Body:
GelKeys: A software application for 2D gel image storage, markup, and sharing. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 2007.
Title:Costello CE, Théberge R, Lin C, Kingsbury J, Klimtchuk E, Connors LH, Skinner M, Seldin DC, O'Connor PB.
Date:2006-11-05
Body:
Top-Down Mass Spectrometry Analysis of Amyloidogenic Proteins. Presented at the XIth International Amyloid Symposium, Woods Hole, MA, November 5-9, 2006.
Body:Use of IRMPD/ECD to probe long-lived radical intermediates. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 3-7, 2007.
Body:Functional Proteomic Analysis of Shear Stress Protection Mechanisms Using a Novel Signaling Complex Isolation Approach. Experimental Biology (FASEB), Washington, DC, USA, April 28-May 2, 2007.
Body:Analysis and Visualization of Data from Complex Proteomics Experiments using the MCW Proteomics Center Suite of Programs. US HUPO Meeting, Seattle, WA. March 4-8, 2007.
Title:Ivleva VB, Viveros-Rogel M, Newburg DS; Ruiz-Palacios G, O'Connor PB, Costello CE.
Date:2007-06-03
Body:Structural characterization of neutral and acidic lipids by TLC/VC-FTMS and MS/MS. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 3-7, 2007.
Title:Jiang Y, Théberge R, Eberhard J, Karamitis G, Prokaeva T, Connors LH, Skinner M, Lin C, O’Connor PB, Costello CE.
Date:2006-11-05
Body:Characterization of Post-Translational Modifications of an Amyloidogenic Immunoglobulin Kappa Light Chain by Mass Spectrometry. Presented at the Xlth International Amyloid Symposium, Woods Hole, MA, November 5-9, 2006.
Body:Optimized enrichment and detection methodologies for the study of phosphopeptides of the epidermal growth factor receptor. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 3-7, 2007.
Title:Lavatelli F, Perlman DH, McComb ME, Theberge R, Seldin DC, Connors LH, Merlini G, Skinner M, Costello CE.
Date:2006-11-05
Body:A Proteomic Approach to the Study of Systemic Amyloidoses. Presented at the Xlth International Amyloid Symposium, Woods Hole, MA, November 5-9, 2006.
Title:Lee J, Levenstein M, Greene AS, Olivier M, Didier D, Peelen D, Scalf M, Thomson JA, Smith LM.
Date:2007-05-22
Body:Cell Surface Receptor Characterization using Whole Cell-binding Array. Wisconsin Symposium on Human Biology, May 22-25, 2007.
Body:Oxidative Enzymopathies, Translational Approaches to Cardiovascular Research, Capri, Italy, Oct. 16, 2007.
Body:The effect of fixed charge modifications on electron capture dissociation. Optimized enrichment and detection methodologies for the study of phosphopeptides of the epidermal growth factor receptor. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 2007.
Body:Aldosterone increases oxidant stress to decrease iNOS-stimulated soluble guanylyl cyclase activity. Abstract presented at the Arteriosclerosis, Thrombosis, Vascular Biology meeting Chicago April 19-21, 2007.
Body:High performance low-temperature preamplifier for FTMS. Abstracts presented at the 6th North American FT-ICR MS Conference, Tahoe City, CA, April 1-5, 2007.
Body:Low noise high performance preamplifiers for non-destructive detection of ions in precision mass spectrometry. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 3-7, 2007.
Body:Aldosterone Increases Oxidant Stress to Impair Soluble Guanylyl Cyclase Activity in Vascular Smooth Muscle Cells. Cardiovascular, Diabetes, and Metabolic Disorders Research Center Weekly Seminar Series, Brigham and Women’s Hospital, Boston, MA Oct 3, 2007.
Body:1D- and 2D-Protein chromatography within the proteomics workflow for enhanced characterization of protein post-translational modifications. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 3-7, 2007.
Title:McComb ME, Théberge R, Hong Z, Infusini G, Jiang Y, Lavatelli F, Perlman DH, Xie B, Wang Y, Zhou C, Cipollo JF, O’Connor PB, Cohen RA, Costello CE.
Date:2007-12-08
Body:Mass spectrometry and atomic force microscopy investigations of protein assemblies and post-translational modifications relevant to degenerative diseases. Presentation at the 3rd Malta Conference on Research and Education in the Middle East, Istanbul, Turkey, December 8-12, 2007.
Body:Proteomic analysis to identify candidate genes influencing high-density lipoprotein particle size in obese individuals. American Society of Human Genetics 58th Annual Meeting, Nov 11-15, 2008.
Title:Mirza SP, Pellitteri MC, Keyes E, Warren M, Didier D, Littrell J, Halligan BD, Twigger S, Greene AS, Olivier M.
Date:2007-06-03
Body:Quantitative analysis of secreted angiogenic proteins during hypoxia. 55th American Society for Mass Spectrometry Conference (ASMS), Indianapolis, Indiana, USA, June 3-7, 2007.
Body:Cryogenic FTMS. Presented at the 6th North American FT-ICR MS Conference, Tahoe City, CA, April 1-5, 2007.
Body:Proteomic clues to the stealthy mechanisms of diseases. (Invited Lecture). Abstract presented at the University of Wisconsin Human Proteomics Program Symposium, Madison, WI, June 11, 2007.
Title:Costello CE, Dauly C, Hong Z, Infusini G, Jiang Y, Perlman DH, Théberge R, Xie B, Zhou C, Cipollo JF, Cohen RA, McCom ME, O’Connor PB, Zai J.
Date:2007-09-16
Body:
Mass spectrometry-based methods to decipher nature’s complexity. Abstract presented at the Joint Meeting of the Société Français de Spectrométrie de Masse and the French Proteomics Society, Pau, France, September 16-20, 2007.
Body:
Development and application of advanced mass spectrometry techniques for proteomics research (Invited Lecture). Presentation at the HUPO 6th Annual World Congress, Seoul, Korea, Oct. 6-10, 2007.
Body:
New technologies for proteomic analysis. (Invited Lecture). Abstract scheduled for presentation at the American Heart Association Scientific Sessions national meeting, November 3-7, 2007, Orlando, FL.
Title:Costello CE, Hong Z, Infusini G, Jiang Y, Lin C, Palaima E, Perlman DH, Théberge R, Wang Y, Xie B, Zhao C, Cohen RA, O'Connor PB, Zaia J, McComb ME.
Date:2008-02-10
Body:
Multiply-pronged approaches to extract the fascinating details of protein structures (Invited Lecture). Presentation at the Association for Biomedical Research Facilities, Salt Lake City, UT, February 10-12, 2008.
Title:McComb ME, Théberge R, Hong Z, Infusini G, Jiang Y, Lavatelli F, Perlman DH, Xie B, Zhou C, Cipollo JF, O’Connor PB, Cohen RA, Costello CE.
Date:2007-06-22
Body:Determinations of protein post-translational modifications relevant to clinical applications of mass spectrometry. (Invited Lecture). Abstract presented at the World Congress of the International Society for Heart Research, Bologna, Italy, June 22-26, 2007.
Body:
Cryogenic FTMS. (Invited Lecture). Presented at the 6th Uppsala Conference on Electron Transfer Dissociation, Hong Kong, December 2006.
Body:Deamidation and isoaspartic acid analysis using ECD. (Invited Lecture). Presented at the Canadian Pharmaceutical & Biomedical Analysis Symposium, Montreal, Canada, May 2007.
Body:Advances in mass spectrometry to enable structural studies in glycobiology. (Invited Lecture). Abstract presented at PITTCON 2008, Chicago, IL, March 3, 2008.
Title:Brasier AR, Spratt H, Wu Z, Boldogh S, Zhang Y, Garofalo RP, Casola A, Haag A, Luxon B, Kurosky A.
Date:2005-02-21
Body:
Nuclear Heat Shock Response and Novel Nuclear Domain 10 Reorganization in Respiratory Syncytial Virus-Infected A549 Cells Identified by High Resolution 2D Gel Electrophoresis. The University of Texas System, Molecular Medicine Symposium, Translating Discoveries into Health, February 21-22, 2005.
Body:Electron capture/detachment dissociation and collisionally activated dissociation provide complementary structural information of permethylated and native oligosaccharides. Presented at the 55th Annual ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June 3-7, 2007.
Body:Micro- and Nanofabricated Devices for Chemical and Biochemical Measurement Systems. (Invited) University of Virginia, Department of Chemistry, Charlottesville, VA, April 13, 2007.
Body:
Micro- and Nanofluidic Devices for Performing Chemical Separations. (Invited) Chromatography Forum of Delaware Valley, Media, PA, March 6, 2007.
Body:Micro- and Nanofabricated Devices for Chemical and Biochemical Measurement Systems. (Invited) University of Illinois, Department of Chemistry, Urbana-Champaign, IL, May 17, 2007.
Body:Extended Mass Range Ion Detector for Time-of-Flight Mass Analysis. Enabling Technologies for Proteomics Conference, Toronto, Canada, May 8-11, 2007.
Body:Stochastic effects of multiple regulators on expression profiles in eukaryotes. Accepted, Proceedings of National Conference on Application of Mathematics in Biology and Medicine, September 21-25, 2004.
Body:Pazdrak K, Straub C, Starosta V, Stafford S, Young W, Kurosky A. Expression and actiavation of toll receptor 7 (Tlr8) ii nhuman eosinophils: effect on eosinophi survival and cytokine production, AAAAI Meeting, San Diego, CA, February 23-27, 2007.
Body:Lipoxin A4 antagonizes granulocyte and macrophave activation evoked by granulocyte-macrophage colony stimulating factor (GM-CSF) by inhibition of protein phosphorylation, AAAAI Meeting, San Diego, CA, February 23-27, 2007.
Body:Model Studies on iTRAQ Modification Sequence and Compositional Specificity. ABRF February 12 - 14, 2006.
Body:Phosphoproteomic Characterization of Human Eosinophils Activated with GM-CSF. ABRF Meeting, February 12 - 14, 2006.
Title:Young TW, Pazdrak K, Straub C, Stafford S, Brasier AR, Wiktorowicz JE, Spratt H, Kurosky A.
Date:2006-03-03
Body:Phosphoproteomic Profiling of Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF)-dependent Activation of Human Eosinophils, Miami Beach, FL - , March 3-7, 2006.
Title:Young TW, Pazdrak K, Staub C, Stafford S, Vitaliy S, Brasier AR, Wiktorowicz JE, Kurosky A.
Date:2006-04-08
Body:Profiling of Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF)-Dependent Signaling in Human Eosinophils, NHLBI Meeting, April 19-20, 2006.
Body:L-plastin interacts with receptor for granulocyte-macrophage colony stimulating factor (GM-CSF) and transduces antiapoptotic signaling in human eosinophils, AAAAI Meeting, San Diego, CA, February 23-27, 2007.
Body:Proteomic analysis to identify candidate genes influencing high-density lipoprotein particle size in obese individuals. Biophysical Society 52nd Annual Meeting, Feb 2008.
Body:YPED: A Proteomics Database for Protein Expression Analysis. submitted to the Symposium of American Medical Informatics Association (AMIA), October 22-26, 2005, Washington, DC
Body:Identification of Sites of Phosphorylation from Tandem Spectrometry Data by Logical Analysis of Result Classes. 4th Annual US HUPO meeting, March 16-19, 2008, Bethesda, MD.
Body:NHLBI Proteomics Center and MS/Proteomics Resource of the WM. Keck Biotechnology Resource Laboratory at Yale University. Northeast Regional Life Sciences Core Directors Meeting Nov 7-9, 2007, Cornell University.
Body:The Art of DIGE. ABRF, Salt Lake City, Utah,
February 9-12, 2008
2008.Body:
Proteomics Resource of the WM Keck Biotechnology Resource Laboratory at Yale University. ABRF, Salt Lake City, Utah, February 9-12, 2008.
Body:Phosphoproteomic Approaches to Profiling of T-lymphocytes Activated via beta-2 integrins, 56th ASMS Conference on Mass Spectrometry, June 1- 5, 2008. Denver, CO.
Body:Electrospray ionization using pointed fibers. US Patent 7,087,895 B1, August 8, 2006. (P0330)
Body:A Novel Posttranslational Modification of Myofilament Proteins: O-GlcNAc on Cardiac Troponin I and Myosin Heavy Chain. American Heart Association, Scientific Sessions New Orleans, LA. November 11, 2008.
Body:Contractile Proteins Following Ischemia Reperfusion Injury and in Heart Failure: Proteomic and Physiologic Studies. The Scientific Basis of Heart Failure in Children American Heart Association Sponsored Conference Estes Park, CO May 14, 2008.
Body:Priming of Eosinophil by Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF) and Upregulation of CD11b/CD18 is Mediated by Phosphorylated Actin-bundling L-Plastin. AAAI Meeting – March 13-17, 2009 Washington, DC.
Body:Increase in Actin O-GlcNAcylation After Acute Exposure to N-Acetyl-D Glucosamine Influences Myofilament Calcium Sensitivity. Poster presentation. American Heart Association, Scientific Sessions New Orleans, LA, November 11, 2008.
Title:Rosenblatt KP, Gurnani P, Pastor J, Wright C, Evans M, Galen R, Caruso D, Leon, J, Bryant-Breenwood P.
Date:2008-03-13
Body:Improved sensitivity and positive predictive value for the detection of pre-term labor: A new, multivariate, quantitative protein microarray serum panel. Society for Maternal/Fetal Medicine Abstract, Dallas, Texas, March, 2008.
Body:Guanylate binding Protein-1 GTPase (Gbp1) Inhibits Ragweed Extract (RWE) Induced Th2 Cytokine Production from CD4 T-Cells cultured with BMDC. AAAI Meeting – March 13-17, 2009 Washington, DC.
Body:Characterization of Cell Surface Proteins Involved in Lipoxin A4 Inhibition of Eosinophils Activation. AAAI Meeting – March 13-17, 2009 Washington, DC.
Body:Inhibition of Protein Tyrosine Phosphorylation-Associated Events by Lipoxin A4. Philadelphia, Pennsylvania. AAAI Meeting – March 14-19, 2008.
Body:Involvement of High Mobility Group Box 1 (HMGB1) In Dendritic Cell Differentiation and Activation of Eosinophils. AAAI Meeting – March 13-17, 2009 Washington, DC.
Body:The Novel Inflammatory Cytokine High Mobility Group Box 1 Protein (HMGB1) Is Actively Released From Human Eosinophils upon Stimultation with Proinflammatory Cytokines. ABRF Meeting, Salt Lake City, February, 2008.
Body:Genes Involved in the Allergic Airway Inflammation Induced by Ragweed Extract (RWE) Associated NADPH Oxidase. AAAI Meeting – March 13-17, 2009 Washington, DC.
Body:Topical N-acetyl cysteine (NAC) Reduces Late Phase Nasal Symptoms Following Ragweed Challenge. AAAI Meeting – March 13-17, 2009 Washington, DC.
Body:Protein interaction predictions from diverse sources. Drug Discov Today 13: 409-416, 2008.
PMID: 18468558
PMID: 18468558
Title:Bowick GC, Spratt Hm, Hogg AE, Endsley JJ, Wiktorowicz JE, Kurosky A, Luxon BA, Gorenstein DG, Herzog NK.
Date:2009-01-01
Body:Analysis of the differential host cell nuclear proteome induced by attenuated and virulent hemorrhagic arenavirus infection. J Virol 83: 687-700, 2009. PMCID: PMC2612403
Body:Bayesian mass spectra peak alignment from mass charge ratios. Cancer Inform. 2008;6:217-41. PMCID: 2623297
Title:Suárez Y, Fernández-Hernando C, Yu J, Gerber SA, Harrison KD, Pober JS, Iruela-Arispe ML, Merkenschlager M, Sessa WC .
Date:2008-09-16
Body:Dicer-dependent endothelial microRNAs are necessary for postnatal angiogenesis. Proc Natl Acad Sci U S A. 2008; 105(37):14082-7. PMCID: 2544582
Body:iQuantitator: iQuantitator: a tool for protein expression inference using iTRAQ. BMC Bioinformatics. 2009 Oct 18;10:342. PMCID: PMC2770557
Body:A Systems-Theoretical Framework for Health and Disease. Abstract modeling of inflammation and preconditioning. Math Biosci. 2009 Jan;217(1):11-8. PMCID: PMC2659667
Body:Identification of neutral biochemical network models from time series data. BMC Syst Biol. 2009 May 5;3:47. PMCID: PMC2694766
Body:Estimation of metabolic pathway systems from different data sources. IET Syst Biol. 2009 Nov;3(6):513-22.
Body:Recent developments in parameter estimation and structure identification of biochemical and genomic systems. Math Biosci. 2009 Jun;219(2):57-83. PMCID: PMC2693292
Body:Molecular morphology of the chick heart visualized by MALDI imaging mass spectrometry. Anat Rec (Hoboken). 2010 May;293(5):821-8.
Body:Design, fabrication and test of a microfluidic nebulizer chip for desorption electrospray ionization mass spectrometry. Sens Actuators B Chem. 2009 Apr 2;137(2):789-796. PMCID: PMC2682712
Body:Dual desorption electrospray ionization-laser desorption ionization mass spectrometry on a common nanoporous alumina platform for enhanced shotgun proteomic analysis. Anal Chem. 2008 Nov 15;80(22):8840-4.
Body:Enrichment of phosphopeptides using biphasic immobilized metal affinity - reversed phase microcolumns. J Proteome Res. 2008 Sep;7(9):4164-72.
Body:Sources of variability among replicate samples separated by two-dimensional gel electrophoresis. J Biomol Tech. 2010 Apr;21(1):3-8. PMCID: PMC2841997
Body:Quantification of protein expression changes in the aging left ventricle of Rattus norvegicus. J Proteome Res. 2009 Sep;8(9):4252-63. PCMID: 2752960
Body:Rapid identification of orexin receptor binding ligands using cell-based screening accelerated with magnetic beads. Mol Biosyst. 2010 Jan;6(1):102-7.
Body:Selective toxin sequestrants for the treatment of bacterial infections. J Am Chem Soc. 2009 Apr 29;131(16):5760-2. PMCID: PMC2810561
Body:Rapid identification of improved protein ligands using peptoid microarrays. Bioorg Med Chem Lett. 2009 Jul 15;19(14):3866-9.
Body:Isolation of antagonists of antigen-specific autoimmune T cell proliferation. Chem Biol. 2009 Nov 25;16(11):1133-9. PMCID: PMC2810551
Body:Differentiation by association: Is a stem cell’s specification determined by the company it keeps? Am J Physiol Heart Circ Physiol. 2008 Apr;294(4):H1503-4.
Title:Astle JM, Simpson LS, Huang Y, Reddy MM, Wilson R, Connell S, Wilson J, Kodadek T.
Date:2010-01-01
Body:Seamless bead to microarray screening: rapid identification of the highest affinity protein ligands from large combinatorial libraries. Chem Biol. 2010 Jan 29;17(1):38-45.
Body:Peptoids as potential therapeutics. Curr Opin Mol Ther. 2009 Jun;11(3):299-307.
Body:Discovering ligands for a microRNA precursor with peptoid microarrays. Nucleic Acids Res. 2009 Sep;37(16):5486-97. PMCID: PMC2760809
Body:Chromogranin B regulates calcium signaling, BNP production and NF-kB activity in cardiomyocytes. Circ Res. 2008 May 23;102(10):1230-8.
Body:An mRNA structure in bacteria that controls gene expression by binding lysine. Genes Dev. 2003 Nov 1;17(21):2688-97. PMCID: PMC280618
Body:Peptide Separations by Gradient Elution Electrochromatography on a Microfluidic Device,” Institute of Biological Engineering (IBE). Chapel Hill, NC, March 6-9, 2008.
Title:Twigger S, Vallejos A, Halligan BD, Shimoyama M, Petri V, Mizra S, Pellitteri-Hahn M, Olivier M, Jacob H, Greene A.
Date:2008-04-16
Body:Apropos - Enhancements for function, pathways and protein-protein interaction analyses. Proteomics Investigators Meeting, Charleston, SC, April 16-17, 2008.
Body:Development of a Microfluidic Photothermal Absorbance Detector Using Polyelectrolytic Gel Electrodes. Institute of Biological Engineering (IBE), Chapel Hill, NC, March 6-9, 2008.
Body:MCW Proteomics Workflow Tools. Presented at Midwestern Computational Biology and Bioinformatics Symposium, Northwestern University, Evanston, IL, 10/6/2007
Body:The MCW Automated Proteomics Workflow (MAPW). 56th American Society for Mass Spectrometry Conference (ASMS), Denver, CO, June 1-5, 2008.
Body:Multistagefragmentation analysis for phosphopeptide identification on an ion-trap mass spectrometer. 56th ASMS Conference on Mass Spectrometry & Allied Topics, Denver, CO, June 1-5, 2008.
Body:Evaluation of Label-Free Proteome Profiling Method for the Analysis of Formalin Fixed Paraffin Embedded Tissues. 56th ASMS Conference on Mass Spectrometry & Allied Topics, Denver, CO, June 1-5, 2008.
Body:Label-Free Proteomic Profiling of Formalin Fixed Paraffin Embedded Pediatric Brain Stem Gliomas, US HUPO, March 2008, Bethesda, MD.
Body:Proteomic Strategy for Analysis of VEGF Mediated Endothelial Cell Signaling Experimental Biology, San Diego, CA, April 5-9, 2008.
Body:A Data Analysis Algorithm for Automated Relative Quantification of Stable Isotope-Labeled Metabolites. 56th American Society for Mass Spectrometry Conference (ASMS), Denver, CO, June 1-5, 2008.
Body:Reversed Phase Monolithic Column Array Devices for Analysis of Peptide Mixtures, 18th International Mass Spectrometry Conference, Bremen, Germany, August 30 - September 4, 2009.
Body:Is diversity library dynamic range leveling a valid approach for quantitative proteomics? 57th ASMS Conference on Mass Spectrometry, May 31-June 4, 2009, Phildadelphia, PA
Body:Reversed Phase Monolithic Column Array Devices for Analysis of Peptide Mixtures, 57th ASMS Conference on Mass Spectrometry, May 31-June 4, 2009, Phildadelphia, PA