NHLBI Proteomics

• Development of Semantic Web Technologies for Protemics Research: Resource Description Framework (RDF), DLG², and ontologies for 2D Gel data (BOSS, CCBase, CCGel)

• ProteomicsPortal is both a central registry and a public forum for proteomics resources. It is designed to serve not only human users in the conventional web but also machine agents in the semantic web.

  Xiaoshu Wang

• Large-Scale Population Studies Using Genetic Polymorphisms (An online education module)

  Dr. Jonathan Cohen
  Questions

• PepID – Rapid identification of peptide sequences based on amino acid composition

• ProMoST – High precision mass and pK calculations for native and modified proteins

• DeNovoID is a program that has been specifically designed to use degenerate amino acid sequence and mass data derived from MS experiments to search a peptide database.

  Dr. Simon N. Twigger
  Medical College of Wisconsin-Proteomics Center

• PPC: Peak Probability Contrasts
  Class Prediction Software for Protein Mass Spectometry Data

  Dr. Robert Tibshirani, Stanford University
  

• Proteomics Informatics Course

Dr. Jimmy Eng, Seattle Proteome Center (SPC)

• SILAC - Stable isotope labeling with amino acids in cell culture 

Dr. Pandey, John Hopkins Proteomic Center

Revised Draft Guidelines for Proteomics Data Publication

In 2004, please recall that the journal Molecular and Cellular Proteomics published an editorial titled:
“The Need for Guidelines in Publication of Peptide and Protein Identification Data” - Carr et al (2004) Mol Cell Proteomics 3: 531-533.

This past May, a workshop was held at the Maison de la Chimie in Paris, France. The focus of this workshop was to draft a revised set of guidelines for the publication of proteomics data.

This revised set of guidelines is now ready for public comment. If you would like to receive a copy of this document, please contact me directly: jkowalak@mail.nih.gov